Aliases for SNORD108 Gene

Subcategory (RNA class) for SNORD108 Gene

snoRNA

Number of RNA Genes sources:

3 / 14

Aliases for SNORD108 Gene

  • Small Nucleolar RNA, C/D Box 108 2 3 5
  • SNORD108 2 174
  • HBII-437 C/D Box SnoRNA 3
  • HBII-437 3
  • RF01158 172

External Ids for SNORD108 Gene

Previous GeneCards Identifiers for SNORD108 Gene

  • GC15P022801
  • GC15P022804
  • GC15P022807
  • GC15P025232
  • GC15P003367
  • GC15P025006
  • GC15P025015
  • GC15P025950
  • GC15P026015
  • GC15P026073
  • GC15P025026
  • GC15P025045
  • GC15P025049
  • GC15P025168
  • GC15P025614
  • GC15P025759
  • GC15P025822
  • GC15P025886

Summaries for SNORD108 Gene

GeneCards Summary for SNORD108 Gene

SNORD108 (Small Nucleolar RNA, C/D Box 108) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD108 include Prader-Willi Syndrome.

Rfam classification for SNORD108 Gene

  • Small nucleolar RNA SNORD108

Additional gene information for SNORD108 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD108 Gene

Genomics for SNORD108 Gene

GeneHancer (GH) Regulatory Elements for SNORD108 Gene

Promoters and enhancers for SNORD108 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J024965 Enhancer 0.3 Ensembl 11.3 -20.7 -20724 2 POLR2A SNORD108 SNORD109A SNORD116-1 SNORD116-2 SNORD116-3 piR-31509 ENSG00000214265 SNURF PWARSN SNORD107
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD108 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD108 gene promoter:
  • AhR
  • AML1a
  • CUTL1
  • FOXJ2
  • FOXJ2 (long isoform)
  • Hlf
  • HOXA9
  • Pbx1a
  • RSRFC4
  • STAT3

Genomic Locations for SNORD108 Gene

Genomic Locations for SNORD108 Gene
chr15:24,986,925-24,986,995
(GRCh38/hg38)
Size:
71 bases
Orientation:
Plus strand
chr15:25,232,072-25,232,142
(GRCh37/hg19)
Size:
71 bases
Orientation:
Plus strand

Genomic View for SNORD108 Gene

Genes around SNORD108 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD108 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD108 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD108 Gene

Proteins for SNORD108 Gene

Post-translational modifications for SNORD108 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD108 Gene

Domains & Families for SNORD108 Gene

Gene Families for SNORD108 Gene

genes like me logo Genes that share domains with SNORD108: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD108 Gene

Function for SNORD108 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD108 Gene

Localization for SNORD108 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD108 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD108 Gene

Pathways & Interactions for SNORD108 Gene

PathCards logo

SuperPathways for SNORD108 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORD108 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD108 Gene

Drugs & Compounds for SNORD108 Gene

No Compound Related Data Available

Transcripts for SNORD108 Gene

mRNA/cDNA for SNORD108 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 ENA transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD108 Gene

No ASD Table

Relevant External Links for SNORD108 Gene

GeneLoc Exon Structure for
SNORD108

Expression for SNORD108 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD108 Gene

genes like me logo Genes that share expression patterns with SNORD108: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD108 Gene

Orthologs for SNORD108 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD108 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD108 31
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD108 31
  • 71 (a)
OneToOne
Species where no ortholog for SNORD108 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD108 Gene

ENSEMBL:
Gene Tree for SNORD108 (if available)
TreeFam:
Gene Tree for SNORD108 (if available)

Paralogs for SNORD108 Gene

No data available for Paralogs for SNORD108 Gene

Variants for SNORD108 Gene

Additional dbSNP identifiers (rs#s) for SNORD108 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD108 Gene

Variant ID Type Subtype PubMed ID
nsv1044125 CNV loss 25217958
nsv1045067 CNV gain 25217958

Additional Variant Information for SNORD108 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD108

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD108 Gene

Disorders for SNORD108 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD108 Gene - From: DISEASES

Disorder Aliases PubMed IDs
prader-willi syndrome
  • pws
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD108

genes like me logo Genes that share disorders with SNORD108: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD108 Gene

Publications for SNORD108 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M … Buiting K (Human molecular genetics 2001) 2 3 54
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORD108 Gene

Sources for SNORD108 Gene