Aliases for SNORD105B Gene

Subcategory (RNA class) for SNORD105B Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORD105B Gene

  • Small Nucleolar RNA, C/D Box 105B 2 3 5
  • SNORD105B 2 5 170
  • SNORD105B SnoRNA 3
  • SNODB1353 177
  • SNODB423 177
  • RF01173 168

External Ids for SNORD105B Gene

Previous GeneCards Identifiers for SNORD105B Gene

  • GC02U901150
  • GC19P010221
  • GC19P009822
  • GC19P010228

Summaries for SNORD105B Gene

GeneCards Summary for SNORD105B Gene

SNORD105B (Small Nucleolar RNA, C/D Box 105B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD105B Gene

  • Small nucleolar RNA U105B

Additional gene information for SNORD105B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD105B Gene

Genomics for SNORD105B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD105B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J010109 Promoter 0.5 EPDnew 600.7 0.0 -4 0.1 RBFOX2 POLR2A P2RY11 PPAN SNORD105B ANGPTL6 PPAN-P2RY11 SNORD105
GH19J010198 Promoter/Enhancer 1 Ensembl ENCODE 11.4 +90.4 90368 3.4 NR2C1 EGR1 RUNX3 GATAD2A ZNF316 NR2C2 CEBPG NR2F1 CEBPB PRDM10 SHFL ANGPTL6 S1PR2 MRPL4 ICAM1 EIF3G P2RY11 PPAN PPAN-P2RY11 SNORD105
GH19J010141 Promoter/Enhancer 0.7 Ensembl ENCODE 12.5 +33.4 33359 2.2 POLR2A CTCF lnc-EIF3G-2 SHFL ANGPTL6 EIF3G SNORD105B P2RY11 SNORD105 PPAN PPAN-P2RY11 RDH8
GH19J010138 Enhancer 0.5 ENCODE 12.5 +28.8 28821 1 POLR2A RCOR1 HIC1 CHD2 GATA2 SNORD105B P2RY11 SNORD105 ANGPTL6 PPAN PPAN-P2RY11 lnc-EIF3G-2 piR-57460-345 EIF3G DNMT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD105B on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD105B gene promoter:
  • AREB6
  • c-Myc
  • GATA-2
  • LCR-F1
  • LyF-1
  • Max
  • Pax-6
  • Zic1
  • Zic3

Genomic Locations for SNORD105B Gene

Genomic Locations for SNORD105B Gene
chr19:10,109,749-10,109,840
(GRCh38/hg38)
Size:
92 bases
Orientation:
Plus strand
chr19:10,220,425-10,220,516
(GRCh37/hg19)
Size:
92 bases
Orientation:
Plus strand

Genomic View for SNORD105B Gene

Genes around SNORD105B on UCSC Golden Path with GeneCards custom track
SNORD105B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD105B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD105B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD105B Gene

Proteins for SNORD105B Gene

Post-translational modifications for SNORD105B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD105B Gene

Domains & Families for SNORD105B Gene

Gene Families for SNORD105B Gene

genes like me logo Genes that share domains with SNORD105B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD105B Gene

Function for SNORD105B Gene

Phenotypes From GWAS Catalog for SNORD105B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD105B Gene

Localization for SNORD105B Gene

Gene Ontology (GO) - Cellular Components for SNORD105B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD105B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD105B Gene

Pathways & Interactions for SNORD105B Gene

PathCards logo

SuperPathways for SNORD105B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD105B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD105B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD105B Gene

Drugs & Compounds for SNORD105B Gene

No Compound Related Data Available

Transcripts for SNORD105B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD105B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000064B8EB_9606 snoRNA 79 4

Ensembl: ENST00000458770 (view in UCSC) ,

Rfam: RF01173,

snoDB: SNODB423,

snOPY: Homo_sapiens300769,

URS000075DF1C_9606 snoRNA 92 3

HGNC: 33572,

RefSeq: NR_003688,

snoDB: SNODB1353,

SNORD105B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD105B Gene

No ASD Table

Relevant External Links for SNORD105B Gene

GeneLoc Exon Structure for
SNORD105B

No data available for mRNA/cDNA for SNORD105B Gene

Expression for SNORD105B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD105B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD105B

genes like me logo Genes that share expression patterns with SNORD105B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD105B Gene

Orthologs for SNORD105B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD105B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia snoU105B 31
  • 97 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia snoU105B 31
  • 88 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia snoU105B 31
  • 83 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm23008 31
  • 70 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia snoU105B 31
  • 65 (a)
OneToOne
Species where no ortholog for SNORD105B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD105B Gene

ENSEMBL:
Gene Tree for SNORD105B (if available)
TreeFam:
Gene Tree for SNORD105B (if available)

Paralogs for SNORD105B Gene

No data available for Paralogs for SNORD105B Gene

Variants for SNORD105B Gene

Additional dbSNP identifiers (rs#s) for SNORD105B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD105B Gene

Variant ID Type Subtype PubMed ID
nsv833743 CNV loss 17160897

Additional Variant Information for SNORD105B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD105B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD105B Gene

Disorders for SNORD105B Gene

Additional Disease Information for SNORD105B

No disorders were found for SNORD105B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD105B Gene

Publications for SNORD105B Gene

  1. C/D-Box Snord105b Promotes Tumorigenesis in Gastric Cancer via ALDOA/C-Myc Pathway. (PMID: 29554660) Zhang C … Shan BE (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2018) 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
  3. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3

Products for SNORD105B Gene

Sources for SNORD105B Gene