Aliases for SNORD105 Gene

Subcategory (RNA class) for SNORD105 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORD105 Gene

  • Small Nucleolar RNA, C/D Box 105 2 3 5
  • SNORD105 2 5 170
  • U105 2 3
  • SNODB180 177
  • RF00584 168

External Ids for SNORD105 Gene

Previous GeneCards Identifiers for SNORD105 Gene

  • GC19U900587
  • GC19P010082
  • GC19P010218
  • GC19P009821
  • GC19P010112
  • GC19P010115
  • GC19P010136
  • GC19P010138
  • GC19P010110
  • GC19P010147
  • GC19P010118
  • GC19P010120
  • GC19P010122
  • GC19P010126
  • GC19P010128
  • GC19P010130
  • GC19P010132
  • GC19P010134

Summaries for SNORD105 Gene

GeneCards Summary for SNORD105 Gene

SNORD105 (Small Nucleolar RNA, C/D Box 105) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD105 include Subvalvular Aortic Stenosis.

Rfam classification for SNORD105 Gene

  • Small nucleolar RNA SNORD105

Additional gene information for SNORD105 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD105 Gene

Genomics for SNORD105 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD105 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J010198 Promoter/Enhancer 1 Ensembl ENCODE 11.4 +92.5 92466 3.4 NR2C1 EGR1 RUNX3 GATAD2A ZNF316 NR2C2 CEBPG NR2F1 CEBPB PRDM10 SHFL ANGPTL6 S1PR2 MRPL4 ICAM1 EIF3G P2RY11 PPAN PPAN-P2RY11 SNORD105
GH19J010141 Promoter/Enhancer 0.7 Ensembl ENCODE 12.5 +35.5 35457 2.2 POLR2A CTCF lnc-EIF3G-2 SHFL ANGPTL6 EIF3G SNORD105B P2RY11 SNORD105 PPAN PPAN-P2RY11 RDH8
GH19J010138 Enhancer 0.5 ENCODE 12.5 +30.9 30919 1 POLR2A RCOR1 HIC1 CHD2 GATA2 SNORD105B P2RY11 SNORD105 ANGPTL6 PPAN PPAN-P2RY11 lnc-EIF3G-2 piR-57460-345 EIF3G DNMT1
GH19J010100 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.3 -3264 8.3 SP1 CREB1 GATAD2A HNRNPL ZNF629 TFE3 ZNF512 RFX1 SIX5 NFKBIZ PPAN ANGPTL6 PPAN-P2RY11 ILF3 ZNF699 LOC100419831 ZNF317 KRI1 FBXL12 ZNF559
GH19J010109 Promoter 0.5 EPDnew 0.7 +2.1 2094 0.1 RBFOX2 POLR2A P2RY11 PPAN SNORD105B ANGPTL6 PPAN-P2RY11 SNORD105
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD105 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD105 gene promoter:
  • AREB6
  • c-Myc
  • Egr-2
  • GATA-2
  • HEN1
  • LCR-F1
  • Max
  • Pax-6
  • Zic3

Genomic Locations for SNORD105 Gene

Genomic Locations for SNORD105 Gene
chr19:10,107,651-10,107,735
(GRCh38/hg38)
Size:
85 bases
Orientation:
Plus strand
chr19:10,218,327-10,218,411
(GRCh37/hg19)
Size:
85 bases
Orientation:
Plus strand

Genomic View for SNORD105 Gene

Genes around SNORD105 on UCSC Golden Path with GeneCards custom track
SNORD105 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD105 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD105 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD105 Gene

Proteins for SNORD105 Gene

Post-translational modifications for SNORD105 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD105 Gene

Domains & Families for SNORD105 Gene

Gene Families for SNORD105 Gene

genes like me logo Genes that share domains with SNORD105: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD105 Gene

Function for SNORD105 Gene

Phenotypes From GWAS Catalog for SNORD105 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD105 Gene

Localization for SNORD105 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD105 gene
Compartment Confidence
extracellular 1
nucleus 1
cytosol 1

Gene Ontology (GO) - Cellular Components for SNORD105 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD105: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD105 Gene

Pathways & Interactions for SNORD105 Gene

PathCards logo

SuperPathways for SNORD105 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD105 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD105: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD105 Gene

Drugs & Compounds for SNORD105 Gene

No Compound Related Data Available

Transcripts for SNORD105 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD105 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000467AB5_9606 snoRNA 85 7

HGNC: 32769,

RefSeq: NR_004381,

Ensembl: ENST00000386910 (view in UCSC) ,

Rfam: RF00584,

snoDB: SNODB180,

snOPY: Homo_sapiens300558,

ENA: AY349606.1:1..85:ncRNA,

SNORD105 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD105 Gene

No ASD Table

Relevant External Links for SNORD105 Gene

GeneLoc Exon Structure for
SNORD105

No data available for mRNA/cDNA for SNORD105 Gene

Expression for SNORD105 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD105 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD105

genes like me logo Genes that share expression patterns with SNORD105: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD105 Gene

Orthologs for SNORD105 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD105 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD105 31
  • 100 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORD105 31
  • 84 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm24067 31
  • 78 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORD105 31
  • 78 (a)
OneToOne
Species where no ortholog for SNORD105 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD105 Gene

ENSEMBL:
Gene Tree for SNORD105 (if available)
TreeFam:
Gene Tree for SNORD105 (if available)

Paralogs for SNORD105 Gene

No data available for Paralogs for SNORD105 Gene

Variants for SNORD105 Gene

Additional dbSNP identifiers (rs#s) for SNORD105 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD105 Gene

Variant ID Type Subtype PubMed ID
nsv833743 CNV loss 17160897

Additional Variant Information for SNORD105 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD105

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD105 Gene

Disorders for SNORD105 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD105 Gene - From: DISEASES

Disorder Aliases PubMed IDs
subvalvular aortic stenosis
  • fixed subaortic stenosis
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD105

genes like me logo Genes that share disorders with SNORD105: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD105 Gene

Publications for SNORD105 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3
  2. Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic. (PMID: 24204295) Han F … Mignot E (PLoS genetics 2013) 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD105 Gene

Sources for SNORD105 Gene