Aliases for SNORD104 Gene

Subcategory (RNA class) for SNORD104 Gene

snoRNA

Number of RNA Genes sources:

3 / 14

Aliases for SNORD104 Gene

  • Small Nucleolar RNA, C/D Box 104 2 3 5
  • SNORD104 2 174
  • RF00289 172
  • U104 3

External Ids for SNORD104 Gene

Previous GeneCards Identifiers for SNORD104 Gene

  • GC17U900624
  • GC17P059580
  • GC17P062223
  • GC17P057593

Summaries for SNORD104 Gene

GeneCards Summary for SNORD104 Gene

SNORD104 (Small Nucleolar RNA, C/D Box 104) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD104 Gene

  • Small nucleolar RNA SNORD104

Additional gene information for SNORD104 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD104 Gene

Genomics for SNORD104 Gene

GeneHancer (GH) Regulatory Elements for SNORD104 Gene

Promoters and enhancers for SNORD104 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J064144 Promoter/Enhancer 2.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +0.8 837 5 FOXK2 ZBTB40 ZNF217 EP300 SIN3A NRF1 TCF12 POLR2G USF1 SP1 ENSG00000281311 SNHG25 SNORA50C SNORD104 CEP95 POLG2 FTSJ3 DDX42 SMARCD2 SLC16A6P1
GH17J064145 Enhancer 0.2 ENCODE 500.7 -1.8 -1769 0.1 SNHG25 SNORD104 piR-34582-004
GH17J064079 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.7 -63.2 -63222 6.7 FOXK2 ZNF217 ZSCAN5C TCF12 POLR2G USF1 NCOR1 GTF2E2 ZIC2 POLR2A ERN1 CSHL1 GH1 SNORD104 MAP3K3 PECAM1 DDX5 PRR29 LIMD2 ICAM2
GH17J064059 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -81.8 -81817 9.5 CTCF POLR2G REST RAD21 SMC3 POLR2A MYC MAFF SAP130 MAFK HSALNG0118071 ERN1 CSHL1 GH1 DDX5 SCN4A SNORD104 CD79B MAP3K3 LIMD2
GH17J064055 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -89.7 -89654 2 TEAD4 EP300 CTCF MYC MEF2B NBN ELF1 POU2F2 EBF1 IKZF1 lnc-ICAM2-3 ERN1 CSHL1 GH1 SNORD104 PECAM1 SMARCD2 MAP3K3 LIMD2 DDX5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD104 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD104 gene promoter:
  • ATF6
  • Cart-1
  • HSF1 (long)
  • HSF1short
  • Nkx2-2
  • Pax-2
  • Pax-2a

Genomic Locations for SNORD104 Gene

Genomic Locations for SNORD104 Gene
chr17:64,146,078-64,146,157
(GRCh38/hg38)
Size:
80 bases
Orientation:
Plus strand
chr17:62,223,438-62,223,517
(GRCh37/hg19)
Size:
80 bases
Orientation:
Plus strand

Genomic View for SNORD104 Gene

Genes around SNORD104 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD104 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD104 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD104 Gene

Proteins for SNORD104 Gene

Post-translational modifications for SNORD104 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD104 Gene

Domains & Families for SNORD104 Gene

Gene Families for SNORD104 Gene

genes like me logo Genes that share domains with SNORD104: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD104 Gene

Function for SNORD104 Gene

Phenotypes From GWAS Catalog for SNORD104 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD104 Gene

Localization for SNORD104 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD104 gene
Compartment Confidence
plasma membrane 1
extracellular 1
mitochondrion 1
nucleus 1
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD104 Gene

Pathways & Interactions for SNORD104 Gene

PathCards logo

SuperPathways for SNORD104 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORD104 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD104 Gene

Drugs & Compounds for SNORD104 Gene

No Compound Related Data Available

Transcripts for SNORD104 Gene

mRNA/cDNA for SNORD104 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 ENA transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD104 Gene

No ASD Table

Relevant External Links for SNORD104 Gene

GeneLoc Exon Structure for
SNORD104

Expression for SNORD104 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD104 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD104

genes like me logo Genes that share expression patterns with SNORD104: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD104 Gene

Orthologs for SNORD104 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD104 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORND104 31
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORND104 31
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORND104 31
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord104 31
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORND104 31
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORND104 31
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORND104 31
  • 76 (a)
OneToOne
Species where no ortholog for SNORD104 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD104 Gene

ENSEMBL:
Gene Tree for SNORD104 (if available)
TreeFam:
Gene Tree for SNORD104 (if available)

Paralogs for SNORD104 Gene

No data available for Paralogs for SNORD104 Gene

Variants for SNORD104 Gene

Additional dbSNP identifiers (rs#s) for SNORD104 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD104 Gene

Variant ID Type Subtype PubMed ID
nsv2117 CNV deletion 18451855
nsv483108 CNV loss 15286789

Additional Variant Information for SNORD104 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD104

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD104 Gene

Disorders for SNORD104 Gene

Additional Disease Information for SNORD104

No disorders were found for SNORD104 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD104 Gene

Publications for SNORD104 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3 54
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 54
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 54
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORD104 Gene

Sources for SNORD104 Gene