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Aliases for SNORD103C Gene

Subcategory (RNA class) for SNORD103C Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD103C Gene

  • Small Nucleolar RNA, C/D Box 103C 2 3
  • Small Nucleolar RNA, C/D Box 85 2 3
  • HBII-251 3
  • SNORD85 3

External Ids for SNORD103C Gene

ORGUL Members for SNORD103C Gene

Previous HGNC Symbols for SNORD103C Gene

  • SNORD85

Previous GeneCards Identifiers for SNORD103C Gene

  • GC01M030971

Summaries for SNORD103C Gene

GeneCards Summary for SNORD103C Gene

SNORD103C (Small Nucleolar RNA, C/D Box 103C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD103C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD103C Gene

Genomics for SNORD103C Gene

GeneHancer (GH) Regulatory Elements for SNORD103C Gene

Promoters and enhancers for SNORD103C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J030965 Enhancer 0.7 ENCODE 650.7 +1.5 1515 1.6 ZEB1 FOSL1 ZNF316 ZNF366 POLR2A RBM22 CHD2 BHLHE40 CBFA2T3 DACH1 GC01M030974 GC01M030976 PIR55237 SNORD103C SNORD103B PUM1
GH01J030974 Enhancer 0.9 Ensembl ENCODE 0.4 -7.5 -7499 1.9 SOX13 FOXA2 SAP130 CEBPG ZNF384 ZIC2 RARA TEAD3 GATAD2A SOX5 SNORD103B GC01M030974 SNORD103C GC01P030988 PUM1
GH01J030977 Enhancer 0.7 ENCODE 0.4 -9.0 -8992 0.2 SIX4 CTCF ZNF2 ZEB1 HIC1 CTBP1 GATA3 ZNF366 ZNF19 PRDM10 SNORD103B GC01M030974 SNORD103C GC01P030988 PUM1
GH01J030982 Enhancer 0.5 Ensembl 0.4 -14.7 -14664 1 ZNF316 RAD21 CHD2 SPI1 SNORD103B GC01P030988 GC01M030974 SNORD103C PUM1
GH01J030980 Enhancer 0.4 ENCODE 0.4 -13.2 -13244 1.1 POLR2A REST SNORD103B GC01P030988 GC01M030974 SNORD103C PUM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD103C on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD103C Gene

Genomic Locations for SNORD103C Gene
chr1:30,968,163-30,968,237
(GRCh38/hg38)
Size:
75 bases
Orientation:
Minus strand
chr1:31,441,010-31,441,084
(GRCh37/hg19)
Size:
75 bases
Orientation:
Minus strand

Genomic View for SNORD103C Gene

Genes around SNORD103C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD103C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD103C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD103C Gene

Proteins for SNORD103C Gene

Post-translational modifications for SNORD103C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD103C Gene

Domains & Families for SNORD103C Gene

Gene Families for SNORD103C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD103C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD103C Gene

Function for SNORD103C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD103C Gene

Localization for SNORD103C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD103C Gene

Pathways & Interactions for SNORD103C Gene

SuperPathways for SNORD103C Gene

No Data Available

Interacting Proteins for SNORD103C Gene

Gene Ontology (GO) - Biological Process for SNORD103C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD103C Gene

Drugs & Compounds for SNORD103C Gene

No Compound Related Data Available

Transcripts for SNORD103C Gene

mRNA/cDNA for SNORD103C Gene

(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD103C Gene

No ASD Table

Relevant External Links for SNORD103C Gene

GeneLoc Exon Structure for
SNORD103C
ECgene alternative splicing isoforms for
SNORD103C

Expression for SNORD103C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD103C Gene:

SNORD103C
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD103C Gene

Orthologs for SNORD103C Gene

No data available for Orthologs and Evolution for SNORD103C Gene

Paralogs for SNORD103C Gene

No data available for Paralogs for SNORD103C Gene

Variants for SNORD103C Gene

Sequence variations from dbSNP and Humsavar for SNORD103C Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000038907 -- 30,968,909(-) A/G upstream_transcript_variant
rs1000639715 -- 30,970,206(-) T/C upstream_transcript_variant
rs1001074977 -- 30,969,838(-) T/C upstream_transcript_variant
rs1001516832 -- 30,968,392(-) G/A upstream_transcript_variant
rs1002071118 -- 30,967,980(-) G/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD103C Gene

Variant ID Type Subtype PubMed ID
esv3585640 CNV loss 21293372
nsv545950 CNV loss 21841781
nsv7701 CNV insertion 18451855

Additional Variant Information for SNORD103C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD103C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD103C Gene

Disorders for SNORD103C Gene

No disorders were found for SNORD103C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD103C Gene

Publications for SNORD103C Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Expression of microRNAs and other small RNAs in prefrontal cortex in schizophrenia, bipolar disorder and depressed subjects. (PMID: 24475125) Smalheiser NR … Dwivedi Y (PloS one 2014) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD103C Gene

Sources for SNORD103C Gene

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