Aliases for SNORD103A Gene

Subcategory (RNA class) for SNORD103A Gene

snoRNA

Number of RNA Genes sources:

3 / 14

Aliases for SNORD103A Gene

  • Small Nucleolar RNA, C/D Box 103A 2 3
  • SNORD103A 2 174
  • SNORD103B 2 174
  • RF00188 172
  • U103 3

External Ids for SNORD103A Gene

Previous GeneCards Identifiers for SNORD103A Gene

  • GC01U901248
  • GC01M031182
  • GC01M031408

Summaries for SNORD103A Gene

GeneCards Summary for SNORD103A Gene

SNORD103A (Small Nucleolar RNA, C/D Box 103A) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD103A include Aarskog-Scott Syndrome.

Rfam classification for SNORD103A Gene

  • Small nucleolar RNA SNORD103/SNORD85

Additional gene information for SNORD103A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD103A Gene

Genomics for SNORD103A Gene

GeneHancer (GH) Regulatory Elements for SNORD103A Gene

Promoters and enhancers for SNORD103A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J030933 Enhancer 0.8 Ensembl ENCODE 500.7 +1.3 1327 2 JUND POLR2A POLR2G RBM22 POU2F2 SUPT5H SCRT1 PRDM6 FEZF1 HNF4A SNORD103A piR-54626-001 piR-57133-014 PUM1
GH01J030935 Enhancer 0.3 Ensembl 500.7 +0.1 75 0.2 SCRT1 SNORD103A piR-54626-001 piR-57133-014 PUM1
GH01J030999 Enhancer 0.6 Ensembl 11.8 -64.4 -64425 2.8 FOXA2 FOSL1 NR2F1 FOSL2 MITF HNF4A JUND HDGF ATF3 ZNF384 RF01045-001 SNORD103A PUM1 SNORD103B lnc-ZCCHC17-9
GH01J031004 Enhancer 0.3 Ensembl 11.8 -68.9 -68925 1 TBX21 BHLHE40 PUM1 SNORD103A SNORD103B RF01045-001 ENSG00000237329 lnc-ZCCHC17-8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD103A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD103A gene promoter:
  • NF-AT
  • NF-AT1
  • NF-AT2
  • NF-AT3
  • NF-AT4
  • Nkx2-5
  • RORalpha1
  • SRY

Genomic Locations for SNORD103A Gene

Genomic Locations for SNORD103A Gene
chr1:30,935,686-30,935,776
(GRCh38/hg38)
Size:
91 bases
Orientation:
Minus strand
chr1:31,408,535-31,408,623
(GRCh37/hg19)
Size:
89 bases
Orientation:
Minus strand

Genomic View for SNORD103A Gene

Genes around SNORD103A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD103A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD103A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD103A Gene

Proteins for SNORD103A Gene

Post-translational modifications for SNORD103A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD103A Gene

Domains & Families for SNORD103A Gene

Gene Families for SNORD103A Gene

genes like me logo Genes that share domains with SNORD103A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD103A Gene

Function for SNORD103A Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD103A Gene

Localization for SNORD103A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD103A gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD103A Gene

Pathways & Interactions for SNORD103A Gene

PathCards logo

SuperPathways for SNORD103A Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORD103A Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD103A Gene

Drugs & Compounds for SNORD103A Gene

No Compound Related Data Available

Transcripts for SNORD103A Gene

mRNA/cDNA for SNORD103A Gene

5 RNACentral transcripts :
2 REFSEQ mRNAs :
1 ENA transcripts :
1 Rfam transcripts :
2 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD103A Gene

No ASD Table

Relevant External Links for SNORD103A Gene

GeneLoc Exon Structure for
SNORD103A

Expression for SNORD103A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD103A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD103A

genes like me logo Genes that share expression patterns with SNORD103A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD103A Gene

Orthologs for SNORD103A Gene

No data available for Orthologs and Evolution for SNORD103A Gene

Paralogs for SNORD103A Gene

No data available for Paralogs for SNORD103A Gene

Variants for SNORD103A Gene

Additional dbSNP identifiers (rs#s) for SNORD103A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD103A Gene

Variant ID Type Subtype PubMed ID
nsv470707 CNV gain 18288195
nsv545950 CNV loss 21841781
nsv945863 CNV duplication 23825009
nsv945864 CNV duplication 23825009
nsv947423 CNV duplication 23825009

Additional Variant Information for SNORD103A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD103A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD103A Gene

Disorders for SNORD103A Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD103A Gene - From: DISEASES

Disorder Aliases PubMed IDs
aarskog-scott syndrome
  • aas
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD103A

genes like me logo Genes that share disorders with SNORD103A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD103A Gene

Publications for SNORD103A Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3 54
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORD103A Gene

Sources for SNORD103A Gene