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Aliases for SNORD101 Gene

Subcategory (RNA class) for SNORD101 Gene


Quality Score for this RNA gene is


Aliases for SNORD101 Gene

  • Small Nucleolar RNA, C/D Box 101 2 3 5
  • C/D Box SnoRNA U101 3
  • U101 3

External Ids for SNORD101 Gene

ORGUL Members for SNORD101 Gene

Previous GeneCards Identifiers for SNORD101 Gene

  • GC06P133183
  • GC06P130711
  • GC06P133139
  • GC06P133140
  • GC06P133145
  • GC06P133151
  • GC06P133159

Summaries for SNORD101 Gene

GeneCards Summary for SNORD101 Gene

SNORD101 (Small Nucleolar RNA, C/D Box 101) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD101 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD101 Gene

Genomics for SNORD101 Gene

GeneHancer (GH) Regulatory Elements for SNORD101 Gene

Promoters and enhancers for SNORD101 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I132812 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 550.8 -0.7 -726 4.9 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 RPS12 GC06P132818 SNORD101 SNORA33 SLC18B1 VNN1 GC06P132821 PIR38370 SNORD100
GH06I132669 Enhancer 0.9 Ensembl ENCODE 11.3 -143.4 -143368 4.2 CTCF FOXA2 MAX RAD21 ZNF366 HNF4G ZNF143 SMC3 ZNF654 NFIA ENSG00000234484 VNN2 VNN3 SNORA33 RPS12 SNORD100 SNORD101 SLC18B1 VNN1 HLFP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD101 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD101 gene promoter:

Genomic Locations for SNORD101 Gene

Genomic Locations for SNORD101 Gene
73 bases
Plus strand

Genomic View for SNORD101 Gene

Genes around SNORD101 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD101 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD101 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD101 Gene

Proteins for SNORD101 Gene

Post-translational modifications for SNORD101 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD101 Gene

Domains & Families for SNORD101 Gene

Gene Families for SNORD101 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD101: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD101 Gene

Function for SNORD101 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD101 Gene

Localization for SNORD101 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD101 Gene

Pathways & Interactions for SNORD101 Gene

SuperPathways for SNORD101 Gene

No Data Available

Interacting Proteins for SNORD101 Gene

Gene Ontology (GO) - Biological Process for SNORD101 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD101 Gene

Drugs & Compounds for SNORD101 Gene

No Compound Related Data Available

Transcripts for SNORD101 Gene

mRNA/cDNA for SNORD101 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD101 Gene

No ASD Table

Relevant External Links for SNORD101 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD101 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD101 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD101 Gene:

genes like me logo Genes that share expression patterns with SNORD101: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD101 Gene

Orthologs for SNORD101 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD101 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD101 34
  • 99 (a)
(Canis familiaris)
Mammalia SNORD101 34
  • 91 (a)
(Bos Taurus)
Mammalia SNORD101 34
  • 89 (a)
(Monodelphis domestica)
Mammalia SNORD101 34
  • 89 (a)
(Mus musculus)
Mammalia Gm23130 34
  • 84 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD101 34 34
  • 82 (a)
(Gallus gallus)
Aves SNORD101 34
  • 85 (a)
(Anolis carolinensis)
Reptilia SNORD101 34
  • 80 (a)
(Danio rerio)
Actinopterygii SNORD101 34
  • 71 (a)
Species where no ortholog for SNORD101 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD101 Gene

Gene Tree for SNORD101 (if available)
Gene Tree for SNORD101 (if available)

Paralogs for SNORD101 Gene

No data available for Paralogs for SNORD101 Gene

Variants for SNORD101 Gene

Sequence variations from dbSNP and Humsavar for SNORD101 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000421697 -- 132,814,751(+) C/T upstream_transcript_variant
rs1000519286 -- 132,814,207(+) T/G upstream_transcript_variant
rs1001612348 -- 132,813,329(+) T/C upstream_transcript_variant
rs1002374186 -- 132,815,044(+) T/G upstream_transcript_variant
rs1002516999 -- 132,814,168(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD101 Gene

Variant ID Type Subtype PubMed ID
nsv970166 CNV duplication 23825009
dgv1830e212 CNV loss 25503493

Additional Variant Information for SNORD101 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD101 Gene

Disorders for SNORD101 Gene

Additional Disease Information for SNORD101

No disorders were found for SNORD101 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD101 Gene

Publications for SNORD101 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SNORD101 Gene

Sources for SNORD101 Gene

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