Aliases for SNORD10 Gene

Subcategory (RNA class) for SNORD10 Gene

snoRNA

Number of RNA Genes sources:

2 / 14

Aliases for SNORD10 Gene

  • Small Nucleolar RNA, C/D Box 10 2 3 5
  • SNORD10 2 174
  • MgU6-77 SnoRNA 3
  • MgU6-77 3
  • RF01290 172

External Ids for SNORD10 Gene

Previous GeneCards Identifiers for SNORD10 Gene

  • GC17P007420
  • GC17P007480
  • GC17P007374
  • GC17P007578
  • GC17P007587
  • GC17P007801
  • GC17P007841
  • GC17P007871
  • GC17P007596
  • GC17P007607
  • GC17P007621
  • GC17P007661
  • GC17P007696
  • GC17P007720
  • GC17P007747
  • GC17P007780

Summaries for SNORD10 Gene

GeneCards Summary for SNORD10 Gene

SNORD10 (Small Nucleolar RNA, C/D Box 10) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD10 Gene

  • Small nucleolar RNA SNORD10

Additional gene information for SNORD10 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD10 Gene

Genomics for SNORD10 Gene

GeneHancer (GH) Regulatory Elements for SNORD10 Gene

Promoters and enhancers for SNORD10 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD10 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD10 gene promoter:
  • AP-1
  • CREB
  • p53
  • PPAR-gamma1
  • PPAR-gamma2

Genomic Locations for SNORD10 Gene

Genomic Locations for SNORD10 Gene
chr17:7,576,811-7,576,958
(GRCh38/hg38)
Size:
148 bases
Orientation:
Plus strand
chr17:7,480,129-7,480,276
(GRCh37/hg19)
Size:
148 bases
Orientation:
Plus strand

Genomic View for SNORD10 Gene

Genes around SNORD10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD10 Gene

Proteins for SNORD10 Gene

Post-translational modifications for SNORD10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD10 Gene

Domains & Families for SNORD10 Gene

Gene Families for SNORD10 Gene

genes like me logo Genes that share domains with SNORD10: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD10 Gene

Function for SNORD10 Gene

Phenotypes From GWAS Catalog for SNORD10 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD10 Gene

Localization for SNORD10 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD10 Gene

Pathways & Interactions for SNORD10 Gene

PathCards logo

SuperPathways for SNORD10 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORD10 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD10 Gene

Drugs & Compounds for SNORD10 Gene

No Compound Related Data Available

Transcripts for SNORD10 Gene

mRNA/cDNA for SNORD10 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD10 Gene

No ASD Table

Relevant External Links for SNORD10 Gene

GeneLoc Exon Structure for
SNORD10

Expression for SNORD10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD10 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD10

SOURCE GeneReport for Unigene cluster for SNORD10 Gene:

Hs.742526
genes like me logo Genes that share expression patterns with SNORD10: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD10 Gene

Orthologs for SNORD10 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD10 31
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD10 31
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD10 31
  • 79 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25835 31
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD10 31
  • 64 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD10 31
  • 52 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD10 31
  • 57 (a)
OneToOne
Species where no ortholog for SNORD10 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD10 Gene

ENSEMBL:
Gene Tree for SNORD10 (if available)
TreeFam:
Gene Tree for SNORD10 (if available)

Paralogs for SNORD10 Gene

No data available for Paralogs for SNORD10 Gene

Variants for SNORD10 Gene

Additional dbSNP identifiers (rs#s) for SNORD10 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD10 Gene

Variant ID Type Subtype PubMed ID
esv2422288 CNV deletion 17116639
nsv457659 CNV loss 19166990
nsv574322 CNV loss 21841781

Additional Variant Information for SNORD10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD10 Gene

Disorders for SNORD10 Gene

Additional Disease Information for SNORD10

No disorders were found for SNORD10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD10 Gene

Publications for SNORD10 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 54
  2. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L … Tomasson MH (The Journal of clinical investigation 2012) 3 54
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54
  4. Modification of U6 spliceosomal RNA is guided by other small RNAs. (PMID: 9844635) Tycowski KT … Steitz JA (Molecular cell 1998) 3 54

Products for SNORD10 Gene

Sources for SNORD10 Gene