Aliases for SNORA9B Gene

Data sources for SNORA9B Gene:

Subcategory (RNA class) for SNORA9B Gene

snoRNA

Aliases for SNORA9B Gene

External Ids for SNORA9B Gene

Previous GeneCards Identifiers for SNORA9B Gene

  • GC00U936749
  • GC12U902693

Summaries for SNORA9B Gene

GeneCards Summary for SNORA9B Gene

SNORA9B (Small Nucleolar RNA, H/ACA Box 9B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA9B Gene

  • Small nucleolar RNA SNORA9

Additional gene information for SNORA9B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA9B Gene

Genomics for SNORA9B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA9B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J123618 Enhancer 0.7 ENCODE 250.7 +2.0 1971 0.2 ZNF217 CTCF TRIM22 SMC3 RAD21 SIN3A TEAD3 SUPT5H ZBTB48 ZBTB33 LOC105370041 SNORA9B HSALNG0094760 DDX55 GTF2H3
GH12J123614 Enhancer 0.5 Ensembl ENCODE 250.7 -1.9 -1909 1.2 ZBTB48 FOS HSALNG0094757 SNORA9B DDX55 TCTN2 TMED2-DT GTF2H3 LOC105370041 HSALNG0094754
GH12J123277 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -338.6 -338607 2.6 SP1 BCL11A TRIM22 IRF4 SPI1 BATF ZBTB33 NFATC1 ZNF384 IKZF1 CDK2AP1 MPHOSPH9 SBNO1-AS1 ENSG00000207189 SBNO1 MTRFR DDX55 SNORA9B RILPL1 EIF2B1
GH12J123280 Enhancer 0.3 Ensembl 11.1 -335.5 -335507 0.8 ZNF316 RF00001-090 RNA5SP375 CDK2AP1 MTRFR DDX55 SNORA9B RILPL1 HSALNG0094715 SBNO1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA9B on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORA9B Gene

Latest Assembly
chr12:123,616,708-123,616,840
(GRCh38/hg38)
Size:
133 bases
Orientation:
Plus strand

Previous Assembly
chr12:124,101,257-124,101,387
(GRCh37/hg19 by Entrez Gene)
Size:
131 bases
Orientation:
Plus strand

chr12:124,101,255-124,101,387
(GRCh37/hg19 by Ensembl)
Size:
133 bases
Orientation:
Plus strand

Genomic View for SNORA9B Gene

Genes around SNORA9B on UCSC Golden Path with GeneCards custom track
SNORA9B in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORA9B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA9B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA9B Gene

Proteins for SNORA9B Gene

Post-translational modifications for SNORA9B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA9B Gene

Domains & Families for SNORA9B Gene

Gene Families for SNORA9B Gene

genes like me logo Genes that share domains with SNORA9B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA9B Gene

Function for SNORA9B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA9B Gene

Localization for SNORA9B Gene

Gene Ontology (GO) - Cellular Components for SNORA9B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA9B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA9B Gene

Pathways & Interactions for SNORA9B Gene

PathCards logo

SuperPathways for SNORA9B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA9B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA9B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA9B Gene

Drugs & Compounds for SNORA9B Gene

No Compound Related Data Available

Transcripts for SNORA9B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA9B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006D051F_9606 snoRNA 133 4

Ensembl: ENST00000384170 (view in UCSC) ,

Rfam: RF00411,

snoDB: SNODB923,

snOPY: Homo_sapiens300696,

URS0000ABD7D7_9606 snoRNA 131 2

RefSeq: NR_145743,

snoDB: SNODB1510,

URS0001BC947D_9606 snoRNA 133 1

Rfam: RF00411,

SNORA9B in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA9B Gene

No ASD Table

Relevant External Links for SNORA9B Gene

GeneLoc Exon Structure for
SNORA9B

No data available for mRNA/cDNA for SNORA9B Gene

Expression for SNORA9B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA9B Gene

Orthologs for SNORA9B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA9B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA9 31
  • 99 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm22457 31
  • 91 (a)
ManyToMany
Gm23626 31
  • 89 (a)
ManyToMany
Gm25800 31
  • 87 (a)
ManyToMany
Gm24438 31
  • 75 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia SNORA9 31
  • 89 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia SNORA9 31
  • 79 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA9 31 31
  • 70 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA9 31 31 31
  • 69 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves SNORA9 31
  • 67 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA9 31 31
  • 64 (a)
ManyToMany
Species where no ortholog for SNORA9B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA9B Gene

ENSEMBL:
Gene Tree for SNORA9B (if available)
TreeFam:
Gene Tree for SNORA9B (if available)

Paralogs for SNORA9B Gene

No data available for Paralogs for SNORA9B Gene

Variants for SNORA9B Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORA9B Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SNORA9B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA9B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA9B Gene

Disorders for SNORA9B Gene

Additional Disease Information for SNORA9B

No disorders were found for SNORA9B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA9B Gene

Publications for SNORA9B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3

No data available for Mastermind for SNORA9B Gene

Products for SNORA9B Gene

Sources for SNORA9B Gene