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Aliases for SNORA9 Gene

Subcategory (RNA class) for SNORA9 Gene


Quality Score for this RNA gene is


Aliases for SNORA9 Gene

  • Small Nucleolar RNA, H/ACA Box 9 2 3 5
  • ACA9 SnoRNA 3
  • SNORA9A 3
  • ACA9 3

External Ids for SNORA9 Gene

Previous GeneCards Identifiers for SNORA9 Gene

  • GC07M044991
  • GC07M045024

Summaries for SNORA9 Gene

GeneCards Summary for SNORA9 Gene

SNORA9 (Small Nucleolar RNA, H/ACA Box 9) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORA9 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA9: ACA9 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1].

Additional gene information for SNORA9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA9 Gene

Genomics for SNORA9 Gene

GeneHancer (GH) Regulatory Elements for SNORA9 Gene

Promoters and enhancers for SNORA9 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J044983 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 650.7 -0.1 -129 5.2 HDGF PKNOX1 SMAD1 ARNT SIN3A ZNF2 IRF4 YY1 POLR2B ZNF766 SNHG15 GC07M044985 SNORA9 DDX56 CCM2 POLM SNORA5C ENSG00000260997 TMED4 SNORA5A
GH07J044982 Enhancer 0.7 ENCODE dbSUPER 0.7 +2.8 2753 0.2 POLR2A MYNN BCLAF1 SUPT5H ZBTB17 RAMP3 GC07M044985 SNORA9 MYO1G
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA9 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA9 gene promoter:
  • Ik-2
  • Lmo2
  • Arnt
  • Sp1
  • XBP-1
  • Brachyury
  • GATA-1
  • E47
  • Tal-1beta
  • GCNF-1

Genomic Locations for SNORA9 Gene

Genomic Locations for SNORA9 Gene
133 bases
Minus strand
3,939 bases
Minus strand

Genomic View for SNORA9 Gene

Genes around SNORA9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA9 Gene

ORGUL Member Location for SNORA9 Gene

ORGUL Member Location for SNORA9 gene

Proteins for SNORA9 Gene

Post-translational modifications for SNORA9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA9 Gene

Domains & Families for SNORA9 Gene

Gene Families for SNORA9 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA9 Gene

Function for SNORA9 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA9 Gene

Localization for SNORA9 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA9 gene
Compartment Confidence
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA9 Gene

Pathways & Interactions for SNORA9 Gene

SuperPathways for SNORA9 Gene

No Data Available

Interacting Proteins for SNORA9 Gene

Gene Ontology (GO) - Biological Process for SNORA9 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA9 Gene

Drugs & Compounds for SNORA9 Gene

No Compound Related Data Available

Transcripts for SNORA9 Gene

mRNA/cDNA for SNORA9 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Unigene Clusters for SNORA9 Gene

Small nucleolar RNA, H/ACA box 9:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA9 Gene

No ASD Table

Relevant External Links for SNORA9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA9 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA9 Gene:


SOURCE GeneReport for Unigene cluster for SNORA9 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA9 Gene

Orthologs for SNORA9 Gene

Evolution for SNORA9 Gene

Gene Tree for SNORA9 (if available)
Gene Tree for SNORA9 (if available)

No data available for Orthologs for SNORA9 Gene

Paralogs for SNORA9 Gene

No data available for Paralogs for SNORA9 Gene

Variants for SNORA9 Gene

Sequence variations from dbSNP and Humsavar for SNORA9 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000729713 -- 44,986,308(-) G/T upstream_transcript_variant
rs1001967210 -- 44,986,040(-) G/C upstream_transcript_variant
rs1003147464 -- 44,986,220(-) T/G upstream_transcript_variant
rs1003432707 -- 44,986,754(-) C/G upstream_transcript_variant
rs1005777454 -- 44,986,690(-) T/C upstream_transcript_variant

Additional Variant Information for SNORA9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA9 Gene

Disorders for SNORA9 Gene

Additional Disease Information for SNORA9

No disorders were found for SNORA9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA9 Gene

Publications for SNORA9 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  5. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1

Products for SNORA9 Gene

Sources for SNORA9 Gene

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