Aliases for SNORA84 Gene

Subcategory (RNA class) for SNORA84 Gene

snoRNA

Number of RNA Genes sources:

2 / 17

Aliases for SNORA84 Gene

  • Small Nucleolar RNA, H/ACA Box 84 2 3 5
  • SNORA84 2 5
  • SNORA84 SnoRNA 3
  • SNODB418 177
  • RF01229 168

External Ids for SNORA84 Gene

Previous GeneCards Identifiers for SNORA84 Gene

  • GC09U900869
  • GC09M094094
  • GC09M095054
  • GC09M064732

Summaries for SNORA84 Gene

GeneCards Summary for SNORA84 Gene

SNORA84 (Small Nucleolar RNA, H/ACA Box 84) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA84 Gene

  • Small nucleolar RNA SNORA84

Additional gene information for SNORA84 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA84 Gene

Genomics for SNORA84 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA84 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J092291 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -1.2 -1183 5.6 ARHGAP35 CEBPG SP1 HNRNPL CREB1 GATAD2A ATF7 PRDM10 REST ZNF629 IARS1 MIR3651 SNORA84 lnc-CENPP-17 lnc-NOL8-1 NOL8 MTND4P15 CENPP OGN MTCO3P29
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA84 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA84 gene promoter:
  • AML1a
  • AREB6
  • C/EBPalpha
  • GATA-1
  • GATA-2
  • GATA-3
  • MyoD
  • Pbx1a

Genomic Locations for SNORA84 Gene

Genomic Locations for SNORA84 Gene
chr9:92,292,461-92,292,593
(GRCh38/hg38)
Size:
133 bases
Orientation:
Minus strand
chr9:95,054,743-95,054,875
(GRCh37/hg19)
Size:
133 bases
Orientation:
Minus strand

Genomic View for SNORA84 Gene

Genes around SNORA84 on UCSC Golden Path with GeneCards custom track
SNORA84 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA84 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA84 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA84 Gene

Proteins for SNORA84 Gene

Post-translational modifications for SNORA84 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA84 Gene

Domains & Families for SNORA84 Gene

Gene Families for SNORA84 Gene

genes like me logo Genes that share domains with SNORA84: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA84 Gene

Function for SNORA84 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA84 Gene

Localization for SNORA84 Gene

Gene Ontology (GO) - Cellular Components for SNORA84 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA84: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA84 Gene

Pathways & Interactions for SNORA84 Gene

PathCards logo

SuperPathways for SNORA84 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA84 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA84: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA84 Gene

Drugs & Compounds for SNORA84 Gene

No Compound Related Data Available

Transcripts for SNORA84 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA84 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000064B135_9606 snoRNA 133 5

HGNC: 33615,

RefSeq: NR_003704,

Ensembl: ENST00000459229 (view in UCSC) ,

Rfam: RF01229,

snoDB: SNODB418,

SNORA84 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA84 Gene

No ASD Table

Relevant External Links for SNORA84 Gene

GeneLoc Exon Structure for
SNORA84

No data available for mRNA/cDNA for SNORA84 Gene

Expression for SNORA84 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA84 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA84

SOURCE GeneReport for Unigene cluster for SNORA84 Gene:

Hs.693449
genes like me logo Genes that share expression patterns with SNORA84: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA84 Gene

Orthologs for SNORA84 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA84 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA84 31
  • 95 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA84 31
  • 90 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA84 31
  • 89 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm25989 31
  • 85 (a)
OneToMany
Gm25394 31
  • 85 (a)
OneToMany
Gm23513 31
  • 84 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA84 31
  • 72 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORA84 31
  • 63 (a)
OneToOne
Chicken
(Gallus gallus)
Aves SNORA84 31
  • 67 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia SNORA84 31
  • 69 (a)
OneToOne
Zebrafish
(Danio rerio)
Actinopterygii SNORA84 31
  • 59 (a)
OneToOne
Species where no ortholog for SNORA84 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA84 Gene

ENSEMBL:
Gene Tree for SNORA84 (if available)
TreeFam:
Gene Tree for SNORA84 (if available)

Paralogs for SNORA84 Gene

No data available for Paralogs for SNORA84 Gene

Variants for SNORA84 Gene

Additional dbSNP identifiers (rs#s) for SNORA84 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA84 Gene

Variant ID Type Subtype PubMed ID
esv3891693 CNV gain 25118596
nsv1046733 CNV gain 25217958

Additional Variant Information for SNORA84 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA84

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA84 Gene

Disorders for SNORA84 Gene

Additional Disease Information for SNORA84

No disorders were found for SNORA84 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA84 Gene

Publications for SNORA84 Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3

Products for SNORA84 Gene

Sources for SNORA84 Gene