Aliases for SNORA80E Gene

Subcategory (RNA class) for SNORA80E Gene

snoRNA

Number of RNA Genes sources:

3 / 14

Aliases for SNORA80E Gene

  • Small Nucleolar RNA, H/ACA Box 80E 2 3 5
  • Small Nucleolar RNA, H/ACA Box 42 2 3
  • SNORA42 3 174
  • ACA42 SnoRNA 3
  • SNORA80E 2
  • RF00406 172
  • ACA42 3

External Ids for SNORA80E Gene

Previous HGNC Symbols for SNORA80E Gene

  • SNORA42

Summaries for SNORA80E Gene

GeneCards Summary for SNORA80E Gene

SNORA80E (Small Nucleolar RNA, H/ACA Box 80E) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA80E Gene

  • Small nucleolar RNA SNORA42/SNORA80 family

Additional gene information for SNORA80E Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA80E Gene

Genomics for SNORA80E Gene

GeneHancer (GH) Regulatory Elements for SNORA80E Gene

Promoters and enhancers for SNORA80E Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J155937 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.5 -23.2 -23174 10.9 EP300 FOXK2 CTCF TCF12 POLR2G SP1 NCOR1 ZIC2 KDM6A TCF7 RXFP4 CLK2 GON4L KHDC4 RRNAD1 ENSG00000271267 RUSC1-AS1 SHC1 THBS3 FLAD1
GH01J156000 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 11 -82.4 -82433 3.6 POLR2G ZNF263 EP300 MYC ZNF341 ZSCAN9 NCOR1 CTCF FOXA2 ZNF316 ENSG00000285677 LOC105371729 RIT1 RXFP4 KHDC4 LAMTOR2 UBQLN4 SCARNA4 MEX3A LMNA
GH01J155949 Enhancer 0.6 dbSUPER 12.2 -31.6 -31590 3.6 RELA RBM25 GABPA POLR2G PBX2 RBM22 SPI1 EBF1 POLR2A MEIS2 MIR6738 RIT1 SCARNA4 ARHGEF2-AS1 ARHGEF2 SNORA80E UBQLN4 LAMTOR2 LMNA MEX3A
GH01J156004 Enhancer 0.7 ENCODE dbSUPER 11 -85.2 -85199 1.2 ZBTB17 ZNF263 EGR2 SP5 ETV5 FOXA1 HNF4G HNF4A ARHGEF2 lnc-ARHGEF2-1 RXFP4 KHDC4 LAMTOR2 UBQLN4 SCARNA4 RIT1 MEX3A LMNA
GH01J155848 Enhancer 0.6 Ensembl 10.8 +69.8 69844 8 SRF MAX CEBPB FOSL1 KLF9 BMI1 ILK HDGF ZBTB33 MYC RIT1 SNORA80E KHDC4 SCARNA4 THBS3 ASH1L MIR555 DAP3 PKLR MSTO2P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA80E on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA80E Gene

Genomic Locations for SNORA80E Gene
chr1:155,919,909-155,920,045
(GRCh38/hg38)
Size:
137 bases
Orientation:
Minus strand
chr1:155,889,700-155,889,836
(GRCh37/hg19)
Size:
137 bases
Orientation:
Minus strand

Genomic View for SNORA80E Gene

Genes around SNORA80E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA80E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA80E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA80E Gene

Proteins for SNORA80E Gene

Post-translational modifications for SNORA80E Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA80E Gene

Domains & Families for SNORA80E Gene

Gene Families for SNORA80E Gene

genes like me logo Genes that share domains with SNORA80E: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA80E Gene

Function for SNORA80E Gene

Phenotypes From GWAS Catalog for SNORA80E Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA80E Gene

Localization for SNORA80E Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA80E gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA80E Gene

Pathways & Interactions for SNORA80E Gene

PathCards logo

SuperPathways for SNORA80E Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORA80E Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA80E Gene

Drugs & Compounds for SNORA80E Gene

No Compound Related Data Available

Transcripts for SNORA80E Gene

mRNA/cDNA for SNORA80E Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 ENA transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA80E Gene

No ASD Table

Relevant External Links for SNORA80E Gene

GeneLoc Exon Structure for
SNORA80E

Expression for SNORA80E Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA80E Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA80E

genes like me logo Genes that share expression patterns with SNORA80E: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA80E Gene

Orthologs for SNORA80E Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA80E Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA42 31
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA42 31
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA42 31 31 31 31
  • 77 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA42 31 31
  • 77 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25945 31
  • 67 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA42 31
  • 65 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA42 31
  • 66 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA42 31
  • 60 (a)
OneToMany
Species where no ortholog for SNORA80E was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA80E Gene

ENSEMBL:
Gene Tree for SNORA80E (if available)
TreeFam:
Gene Tree for SNORA80E (if available)

Paralogs for SNORA80E Gene

No data available for Paralogs for SNORA80E Gene

Variants for SNORA80E Gene

Additional dbSNP identifiers (rs#s) for SNORA80E Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA80E Gene

Variant ID Type Subtype PubMed ID
esv33869 CNV loss 17666407

Additional Variant Information for SNORA80E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA80E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA80E Gene

Disorders for SNORA80E Gene

Additional Disease Information for SNORA80E

No disorders were found for SNORA80E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA80E Gene

Publications for SNORA80E Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 54
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 54
  3. SNORA42 enhances prostate cancer cell viability, migration and EMT and is correlated with prostate cancer poor prognosis. (PMID: 30053504) Yi C … Huang Y (The international journal of biochemistry & cell biology 2018) 3 54
  4. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 54
  5. Clinical significance of SNORA42 as an oncogene and a prognostic biomarker in colorectal cancer. (PMID: 26475630) Okugawa Y … Goel A (Gut 2017) 3 54

Products for SNORA80E Gene

Sources for SNORA80E Gene