SNORA80C Gene (RNA Gene)

Small Nucleolar RNA, H/ACA Box 80C

GC16M030422
GIFtS:
9
See more...

Aliases for SNORA80C Gene

Subcategory (RNA class) for SNORA80C Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORA80C Gene

  • Small Nucleolar RNA, H/ACA Box 80C 2 3 5
  • SNORA80C 2 5
  • SNODB361 177
  • SNORA80 170
  • RF00406 168

External Ids for SNORA80C Gene

Previous GeneCards Identifiers for SNORA80C Gene

  • GC16M030420
  • GC00U936713
  • GC16U902414

Summaries for SNORA80C Gene

GeneCards Summary for SNORA80C Gene

SNORA80C (Small Nucleolar RNA, H/ACA Box 80C) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA80C Gene

  • Small nucleolar RNA SNORA42/SNORA80 family

Additional gene information for SNORA80C Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA80C Gene

Genomics for SNORA80C Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SNORA80C Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA80C on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORA80C Gene

Genomic Locations for SNORA80C Gene
chr16:30,419,625-30,419,759
(GRCh38/hg38)
Size:
135 bases
Orientation:
Minus strand
chr16:30,430,946-30,431,080
(GRCh37/hg19)
Size:
135 bases
Orientation:
Minus strand

Genomic View for SNORA80C Gene

Genes around SNORA80C on UCSC Golden Path with GeneCards custom track
SNORA80C in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA80C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA80C Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORA80C Gene

Proteins for SNORA80C Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORA80C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA80C Gene

Domains & Families for SNORA80C Gene

Gene Families for SNORA80C Gene

HGNC:
genes like me logo Genes that share domains with SNORA80C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA80C Gene

Function for SNORA80C Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORA80C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA80C Gene

Localization for SNORA80C Gene

Gene Ontology (GO) - Cellular Components for SNORA80C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA80C: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA80C Gene

Pathways & Interactions for SNORA80C Gene

PathCards logo

SuperPathways for SNORA80C Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA80C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA80C: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA80C Gene

Drugs & Compounds for SNORA80C Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORA80C Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA80C Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000063D36F_9606 snoRNA 135 6

HGNC: 50434,

RefSeq: NR_145731,

Ensembl: ENST00000362917 (view in UCSC) ,

Rfam: RF00406,

snoDB: SNODB361,

snOPY: Homo_sapiens300588,

SNORA80C in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA80C Gene

No ASD Table

Relevant External Links for SNORA80C Gene

GeneLoc Exon Structure for
SNORA80C

No data available for mRNA/cDNA for SNORA80C Gene

Expression for SNORA80C Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA80C Gene

Orthologs for SNORA80C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA80C Gene

Organism Taxonomy Gene Similarity Type Details
Mouse
(Mus musculus)
 Mammalia Gm24696 31
  • 81 (a)
 OneToMany
Gm22748 31
  • 79 (a)
 OneToMany
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORA42 31 31
  • 71 (a)
 ManyToMany
Cow
(Bos Taurus)
 Mammalia SNORA42 31
  • 71 (a)
 ManyToMany
Dog
(Canis familiaris)
 Mammalia SNORA42 31
  • 69 (a)
 ManyToMany
Oppossum
(Monodelphis domestica)
 Mammalia SNORA42 31
  • 66 (a)
 OneToMany
Lizard
(Anolis carolinensis)
 Reptilia SNORA42 31
  • 66 (a)
 ManyToMany
Zebrafish
(Danio rerio)
 Actinopterygii SNORA42 31
  • 54 (a)
 OneToMany
Species where no ortholog for SNORA80C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA80C Gene

ENSEMBL:
Gene Tree for SNORA80C (if available)
TreeFam:
Gene Tree for SNORA80C (if available)

Paralogs for SNORA80C Gene

No data available for Paralogs for SNORA80C Gene

Variants for SNORA80C Gene

Additional dbSNP identifiers (rs#s) for SNORA80C Gene

Additional Variant Information for SNORA80C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA80C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA80C Gene

Disorders for SNORA80C Gene

Additional Disease Information for SNORA80C

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORA80C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA80C Gene

Publications for SNORA80C Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3

No data available for Mastermind for SNORA80C Gene

Products for SNORA80C Gene

Sources for SNORA80C Gene