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Aliases for SNORA7B Gene

Subcategory (RNA class) for SNORA7B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA7B Gene

  • Small Nucleolar RNA, H/ACA Box 7B 2 3 5
  • ACA7B 3

External Ids for SNORA7B Gene

ORGUL Members for SNORA7B Gene

Previous GeneCards Identifiers for SNORA7B Gene

  • GC03P130598
  • GC03M130601
  • GC03M129116
  • GC03M126499

Summaries for SNORA7B Gene

GeneCards Summary for SNORA7B Gene

SNORA7B (Small Nucleolar RNA, H/ACA Box 7B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA7B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA7B Gene

Genomics for SNORA7B Gene

GeneHancer (GH) Regulatory Elements for SNORA7B Gene

Promoters and enhancers for SNORA7B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I129398 Promoter/Enhancer 1.5 Ensembl ENCODE 550.8 -1.9 -1925 2.2 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 RPL32P3 GC03M129400 SNORA7B IFT122 ISY1 H1FX MBD4 RHO ENSG00000244932 CNBP
GH03I129387 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +7.4 7351 5.3 FOXA2 ZBTB21 JUN INSM2 HIC1 ZNF664 GATA3 ATF7 FOSL2 FOS RPL32P3 IFT122 PIR62447 ENSG00000244932 SNORA7B GC03M129400 GC03P129796
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA7B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA7B gene promoter:

Genomic Locations for SNORA7B Gene

Genomic Locations for SNORA7B Gene
chr3:129,397,210-129,397,348
(GRCh38/hg38)
Size:
139 bases
Orientation:
Minus strand
chr3:129,116,053-129,116,191
(GRCh37/hg19)

Genomic View for SNORA7B Gene

Genes around SNORA7B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA7B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA7B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA7B Gene

Proteins for SNORA7B Gene

Post-translational modifications for SNORA7B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA7B Gene

Domains & Families for SNORA7B Gene

Gene Families for SNORA7B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA7B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA7B Gene

Function for SNORA7B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA7B Gene

Localization for SNORA7B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA7B Gene

Pathways & Interactions for SNORA7B Gene

SuperPathways for SNORA7B Gene

No Data Available

Interacting Proteins for SNORA7B Gene

Gene Ontology (GO) - Biological Process for SNORA7B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA7B Gene

Drugs & Compounds for SNORA7B Gene

No Compound Related Data Available

Transcripts for SNORA7B Gene

mRNA/cDNA for SNORA7B Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA7B Gene

Small nucleolar RNA, H/ACA box 7B:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA7B Gene

No ASD Table

Relevant External Links for SNORA7B Gene

GeneLoc Exon Structure for
SNORA7B
ECgene alternative splicing isoforms for
SNORA7B

Expression for SNORA7B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA7B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA7B Gene:

SNORA7B

SOURCE GeneReport for Unigene cluster for SNORA7B Gene:

Hs.711399
genes like me logo Genes that share expression patterns with SNORA7B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA7B Gene

Orthologs for SNORA7B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA7B Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORA7 34
  • 88 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORA7 34
  • 87 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORA7 34
  • 80 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia SNORA7 34
  • 75 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA7 34
  • 69 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA7 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34
  • 51 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA7 34
  • 71 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA7 34
  • 70 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA7 34
  • 58 (a)
OneToMany
Species where no ortholog for SNORA7B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA7B Gene

ENSEMBL:
Gene Tree for SNORA7B (if available)
TreeFam:
Gene Tree for SNORA7B (if available)

Paralogs for SNORA7B Gene

No data available for Paralogs for SNORA7B Gene

Variants for SNORA7B Gene

Sequence variations from dbSNP and Humsavar for SNORA7B Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1003188646 -- 129,398,085(-) A/G upstream_transcript_variant
rs1003457491 -- 129,397,482(-) T/C upstream_transcript_variant
rs1006100668 -- 129,398,034(-) A/G upstream_transcript_variant
rs1008823546 -- 129,398,729(-) C/G upstream_transcript_variant
rs1010889974 -- 129,397,036(-) A/AA downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA7B Gene

Variant ID Type Subtype PubMed ID
nsv979877 CNV duplication 23825009
nsv591652 CNV gain 21841781
esv3597741 CNV loss 21293372
esv2725901 CNV deletion 23290073

Additional Variant Information for SNORA7B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA7B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA7B Gene

Disorders for SNORA7B Gene

Additional Disease Information for SNORA7B

No disorders were found for SNORA7B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA7B Gene

Publications for SNORA7B Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA7B Gene

Sources for SNORA7B Gene

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