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Aliases for SNORA7A Gene

Subcategory (RNA class) for SNORA7A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA7A Gene

  • Small Nucleolar RNA, H/ACA Box 7A 2 3 5
  • ACA7 Small Nucleolar RNA 3
  • ACA7 SnoRNA 3
  • ACA7 3

External Ids for SNORA7A Gene

Previous GeneCards Identifiers for SNORA7A Gene

  • GC03U900748
  • GC03M012859
  • GC03M012851
  • GC03M012875
  • GC03M012815
  • GC03M012881

Summaries for SNORA7A Gene

GeneCards Summary for SNORA7A Gene

SNORA7A (Small Nucleolar RNA, H/ACA Box 7A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA7A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA7A Gene

Genomics for SNORA7A Gene

GeneHancer (GH) Regulatory Elements for SNORA7A Gene

Promoters and enhancers for SNORA7A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I012838 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -0.4 -352 3.6 CLOCK DMAP1 YBX1 YY1 ZNF213 E2F8 ZNF143 SP3 SSRP1 NBN GC03M012839 GC03M012841 GC03M012844 RPL32 SNORA7A TAMM41 ENSG00000272263 TSEN2 LINC02022 CAND2
GH03I012839 Enhancer 0.6 ENCODE dbSUPER 550.8 +1.9 1913 0.2 POLR2A SUPT5H GC03M012839 GC03M012841 GC03M012844 SNORA7A LINC02022 ENSG00000272263 RPL32 CAND2
GH03I012962 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 10.8 -126.5 -126520 8.7 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IQSEC1 TSEN2 RPL32 SNORA7A ENSG00000250939 CAND2 GC03M014446 PIR41577 GC03P013026
GH03I012875 Enhancer 1.2 FANTOM5 Ensembl ENCODE 12.2 -35.7 -35747 1.4 HDAC1 MEIS2 CTCF KLF1 PKNOX1 RB1 SIN3A BMI1 CCNT2 MTA3 GC03M014339 GC03M014415 GC03M014430 GC03M014431 GC03P012949 LOC105376956 PIR38353 PIR48320 PIR49578 PIR56681
GH03I012885 Enhancer 1 Ensembl ENCODE dbSUPER 13 -45.5 -45491 1.3 MNT ZIC2 IRF4 NFIC ZNF184 POLR2A STAT2 IKZF1 ETV6 IKZF2 LINC02022 ENSG00000250939 RPL32 SNORA7A IQSEC1 PIRC11 LOC105376956
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA7A on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA7A Gene

Genomic Locations for SNORA7A Gene
chr3:12,840,312-12,840,450
(GRCh38/hg38)
Size:
139 bases
Orientation:
Minus strand
chr3:12,881,811-12,881,949
(GRCh37/hg19)

Genomic View for SNORA7A Gene

Genes around SNORA7A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA7A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA7A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA7A Gene

Proteins for SNORA7A Gene

Post-translational modifications for SNORA7A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA7A Gene

Domains & Families for SNORA7A Gene

Gene Families for SNORA7A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA7A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA7A Gene

Function for SNORA7A Gene

Phenotypes From GWAS Catalog for SNORA7A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA7A Gene

Localization for SNORA7A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA7A Gene

Pathways & Interactions for SNORA7A Gene

SuperPathways for SNORA7A Gene

No Data Available

Interacting Proteins for SNORA7A Gene

Gene Ontology (GO) - Biological Process for SNORA7A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA7A Gene

Drugs & Compounds for SNORA7A Gene

No Compound Related Data Available

Transcripts for SNORA7A Gene

mRNA/cDNA for SNORA7A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA7A Gene

No ASD Table

Relevant External Links for SNORA7A Gene

GeneLoc Exon Structure for
SNORA7A
ECgene alternative splicing isoforms for
SNORA7A

Expression for SNORA7A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA7A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA7A Gene:

SNORA7A
genes like me logo Genes that share expression patterns with SNORA7A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA7A Gene

Orthologs for SNORA7A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA7A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA7 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA7 34
  • 87 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORA7 34
  • 87 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snora7a 34
  • 86 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA7 34
  • 70 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA7 34
  • 69 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA7 34
  • 71 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA7 34
  • 70 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA7 34
  • 59 (a)
OneToMany
Species where no ortholog for SNORA7A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA7A Gene

ENSEMBL:
Gene Tree for SNORA7A (if available)
TreeFam:
Gene Tree for SNORA7A (if available)

Paralogs for SNORA7A Gene

No data available for Paralogs for SNORA7A Gene

Variants for SNORA7A Gene

Sequence variations from dbSNP and Humsavar for SNORA7A Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1002519717 -- 12,839,947(-) CATTA/ downstream_transcript_variant
rs1003321345 -- 12,841,382(-) C/A upstream_transcript_variant
rs1003490279 -- 12,841,281(-) C/T upstream_transcript_variant
rs1004469441 -- 12,842,083(-) CCACT/ upstream_transcript_variant
rs1007495983 -- 12,840,604(-) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA7A Gene

Variant ID Type Subtype PubMed ID
nsv963297 CNV duplication 23825009
nsv7351 OTHER inversion 18451855
nsv589716 CNV loss 21841781
nsv589715 CNV loss 21841781
nsv460435 CNV loss 19166990
nsv1147269 CNV deletion 26484159
nsv1112379 CNV deletion 24896259
esv3893663 CNV gain 25118596
esv2751977 CNV gain 17911159
dgv850e199 CNV deletion 23128226
dgv763e201 CNV deletion 23290073

Additional Variant Information for SNORA7A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA7A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA7A Gene

Disorders for SNORA7A Gene

Additional Disease Information for SNORA7A

No disorders were found for SNORA7A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA7A Gene

Publications for SNORA7A Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. TRIM65 regulates microRNA activity by ubiquitination of TNRC6. (PMID: 24778252) Li S … Dorf ME (Proceedings of the National Academy of Sciences of the United States of America 2014) 3 58
  4. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett EJ … Harper JW (Cell 2010) 3 58
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA7A Gene

Sources for SNORA7A Gene

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