Aliases for SNORA79 Gene

Subcategory (RNA class) for SNORA79 Gene

snoRNA

Number of RNA Genes sources:

2 / 14

Aliases for SNORA79 Gene

  • Small Nucleolar RNA, H/ACA Box 79 2 3 5
  • SNORA79 2 174
  • SNORA79A 3
  • RF00600 172
  • ACA65 3

External Ids for SNORA79 Gene

Previous GeneCards Identifiers for SNORA79 Gene

  • GC14P080740
  • GC14M080739
  • GC14M081669
  • GC14M061836

Summaries for SNORA79 Gene

GeneCards Summary for SNORA79 Gene

SNORA79 (Small Nucleolar RNA, H/ACA Box 79) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA79 Gene

  • Small nucleolar RNA SNORA79

Additional gene information for SNORA79 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA79 Gene

Genomics for SNORA79 Gene

GeneHancer (GH) Regulatory Elements for SNORA79 Gene

Promoters and enhancers for SNORA79 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J081169 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 11.3 +32.5 32504 1.9 CTCF SIN3A NRF1 TCF12 POLR2G NCOR1 PHF8 JUND TEAD4 FOS ENSG00000284959 ENSG00000286686 LOC101928462 lnc-TSHR-1 SNORA79 GTF2A1 CEP128 LOC105370594
GH14J081163 Enhancer 1.1 Ensembl ENCODE 10.8 +38.7 38733 4.2 CTCF JUND ZBTB11 TRIM28 TOE1 TGIF2 RAD21 CTBP1 MYC TRIM22 SNORA79 GTF2A1 CEP128 LOC105370594 lnc-GTF2A1-3 ENSG00000284959 LOC101928462
GH14J081245 Promoter/Enhancer 1 Ensembl ENCODE 10.7 -44.2 -44211 2.3 ZNF217 RFX1 CTBP1 SIN3A ZNF592 DDX20 KLF9 MAZ DPF2 MAFK DYNLL1P1 HSALNG0102784 lnc-STON2-3 GTF2A1 SNORA79 CEP128 piR-59425-013
GH14J080996 Enhancer 0.9 FANTOM5 Ensembl 9.9 +206.1 206133 1 CTCF FOS REST RAD21 TRIM22 SMC3 RBM25 CEBPG FOSL2 CEBPB GTF2A1 CEP128 SNORA79 NMNAT1P1 RPL17P3 lnc-NRXN3-4 TSHR
GH14J081127 Enhancer 0.8 FANTOM5 Ensembl 10.3 +75.0 75033 2 ZNF316 MAFF CEBPG FOS MAFK JUND MAFG RXRA CEBPB HNF4A GTF2A1 SNORA79 CEP128 piR-33605-159 lnc-GTF2A1-3 ENSG00000284959 LOC101928462 TSHR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA79 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA79 gene promoter:
  • AML1a
  • Bach2
  • FOXJ2
  • FOXJ2 (long isoform)
  • GATA-1
  • MyoD
  • POU6F1 (c2)
  • ZID

Genomic Locations for SNORA79 Gene

Genomic Locations for SNORA79 Gene
chr14:81,202,695-81,202,834
(GRCh38/hg38)
Size:
140 bases
Orientation:
Minus strand
chr14:81,669,039-81,669,178
(GRCh37/hg19)
Size:
140 bases
Orientation:
Minus strand

Genomic View for SNORA79 Gene

Genes around SNORA79 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA79 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA79 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA79 Gene

Proteins for SNORA79 Gene

Post-translational modifications for SNORA79 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA79 Gene

Domains & Families for SNORA79 Gene

Gene Families for SNORA79 Gene

genes like me logo Genes that share domains with SNORA79: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA79 Gene

Function for SNORA79 Gene

Phenotypes From GWAS Catalog for SNORA79 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA79 Gene

Localization for SNORA79 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA79 gene
Compartment Confidence
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA79 Gene

Pathways & Interactions for SNORA79 Gene

PathCards logo

SuperPathways for SNORA79 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORA79 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA79 Gene

Drugs & Compounds for SNORA79 Gene

No Compound Related Data Available

Transcripts for SNORA79 Gene

mRNA/cDNA for SNORA79 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA79 Gene

No ASD Table

Relevant External Links for SNORA79 Gene

GeneLoc Exon Structure for
SNORA79

Expression for SNORA79 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA79 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA79

SOURCE GeneReport for Unigene cluster for SNORA79 Gene:

Hs.693251
genes like me logo Genes that share expression patterns with SNORA79: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA79 Gene

Orthologs for SNORA79 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA79 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA79 31
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA79 31
  • 91 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA79 31 31
  • 90 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25848 31
  • 86 (a)
OneToMany
Gm25776 31
  • 84 (a)
OneToMany
Gm23987 31
  • 81 (a)
OneToMany
Gm24241 31
  • 70 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA79 31
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA79 31
  • 67 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA79 31
  • 55 (a)
OneToMany
Species where no ortholog for SNORA79 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA79 Gene

ENSEMBL:
Gene Tree for SNORA79 (if available)
TreeFam:
Gene Tree for SNORA79 (if available)

Paralogs for SNORA79 Gene

No data available for Paralogs for SNORA79 Gene

Variants for SNORA79 Gene

Additional dbSNP identifiers (rs#s) for SNORA79 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA79 Gene

Variant ID Type Subtype PubMed ID
esv3635076 CNV gain 21293372
nsv832841 CNV gain 17160897

Additional Variant Information for SNORA79 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA79

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA79 Gene

Disorders for SNORA79 Gene

Additional Disease Information for SNORA79

No disorders were found for SNORA79 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA79 Gene

Publications for SNORA79 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 54
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 54
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORA79 Gene

Sources for SNORA79 Gene