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Aliases for SNORA79 Gene

Subcategory (RNA class) for SNORA79 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA79 Gene

  • Small Nucleolar RNA, H/ACA Box 79 2 3 5
  • SNORA79A 3
  • ACA65 3

External Ids for SNORA79 Gene

ORGUL Members for SNORA79 Gene

Previous GeneCards Identifiers for SNORA79 Gene

  • GC14P080740
  • GC14M080739
  • GC14M081669
  • GC14M061836

Summaries for SNORA79 Gene

GeneCards Summary for SNORA79 Gene

SNORA79 (Small Nucleolar RNA, H/ACA Box 79) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA79 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA79 Gene

Genomics for SNORA79 Gene

GeneHancer (GH) Regulatory Elements for SNORA79 Gene

Promoters and enhancers for SNORA79 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I081169 Promoter/Enhancer 1.5 Ensembl ENCODE 11.3 +32.5 32504 1.9 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 POLR2B GLIS2 ZNF207 ZNF143 LOC101928462 SNORA79 GTF2A1 CEP128 LOC105370594
GH14I081163 Enhancer 1 Ensembl ENCODE 10.8 +39.7 39721 0.2 HDAC1 ATF1 CHAMP1 TCF12 SIRT6 ATF7 USF2 ZNF592 SMARCA4 IKZF1 SNORA79 GTF2A1 CEP128 LOC101928462 LOC105370594 NMNAT1P1
GH14I081164 Enhancer 1 Ensembl ENCODE 10.8 +38.4 38434 0.4 ELF3 PKNOX1 ARID4B SIN3A BATF RAD21 YY1 ZNF335 ZNF143 FOS SNORA79 GTF2A1 CEP128 LOC105370594 LOC101928462 NMNAT1P1
GH14I081176 Enhancer 0.9 UCNEbase Ensembl ENCODE 11 +25.9 25862 1.7 YY1 GTF2A1 SNORA79 GC14M081176 LOC101928462
GH14I080996 Enhancer 1 FANTOM5 Ensembl 9.9 +206.3 206322 0.6 CTCF PKNOX1 CEBPG RAD21 ZNF143 SMC3 FOSL2 FOS BCLAF1 CREM GTF2A1 CEP128 SNORA79 NMNAT1P1 RPL17P3 GC14P080982 TSHR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA79 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA79 gene promoter:

Genomic Locations for SNORA79 Gene

Genomic Locations for SNORA79 Gene
chr14:81,202,695-81,202,834
(GRCh38/hg38)
Size:
140 bases
Orientation:
Minus strand
chr14:81,669,039-81,669,178
(GRCh37/hg19)

Genomic View for SNORA79 Gene

Genes around SNORA79 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA79 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA79 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA79 Gene

Proteins for SNORA79 Gene

Post-translational modifications for SNORA79 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA79 Gene

Domains & Families for SNORA79 Gene

Gene Families for SNORA79 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA79: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA79 Gene

Function for SNORA79 Gene

Phenotypes From GWAS Catalog for SNORA79 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA79 Gene

Localization for SNORA79 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA79 Gene

Pathways & Interactions for SNORA79 Gene

SuperPathways for SNORA79 Gene

No Data Available

Interacting Proteins for SNORA79 Gene

Gene Ontology (GO) - Biological Process for SNORA79 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA79 Gene

Drugs & Compounds for SNORA79 Gene

No Compound Related Data Available

Transcripts for SNORA79 Gene

mRNA/cDNA for SNORA79 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA79 Gene

No ASD Table

Relevant External Links for SNORA79 Gene

GeneLoc Exon Structure for
SNORA79
ECgene alternative splicing isoforms for
SNORA79

Expression for SNORA79 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA79 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA79 Gene:

SNORA79

SOURCE GeneReport for Unigene cluster for SNORA79 Gene:

Hs.693251
genes like me logo Genes that share expression patterns with SNORA79: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA79 Gene

Orthologs for SNORA79 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA79 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA79 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA79 34
  • 91 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA79 34 34
  • 90 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25848 34
  • 86 (a)
OneToMany
Gm25776 34
  • 84 (a)
OneToMany
Gm23987 34
  • 81 (a)
OneToMany
Gm24241 34
  • 70 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA79 34
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA79 34
  • 67 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA79 34
  • 55 (a)
OneToMany
Species where no ortholog for SNORA79 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA79 Gene

ENSEMBL:
Gene Tree for SNORA79 (if available)
TreeFam:
Gene Tree for SNORA79 (if available)

Paralogs for SNORA79 Gene

No data available for Paralogs for SNORA79 Gene

Variants for SNORA79 Gene

Sequence variations from dbSNP and Humsavar for SNORA79 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1005934864 -- 81,203,211(-) G/A upstream_transcript_variant
rs1006063396 -- 81,203,530(-) A/G upstream_transcript_variant
rs1006820406 -- 81,204,550(-) A/C upstream_transcript_variant
rs1006866333 -- 81,203,842(-) T/C upstream_transcript_variant
rs1007270091 -- 81,202,449(-) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA79 Gene

Variant ID Type Subtype PubMed ID
esv3635076 CNV gain 21293372
nsv832841 CNV gain 17160897

Additional Variant Information for SNORA79 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA79

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA79 Gene

Disorders for SNORA79 Gene

Additional Disease Information for SNORA79

No disorders were found for SNORA79 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA79 Gene

Publications for SNORA79 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA79 Gene

Sources for SNORA79 Gene

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