Aliases for SNORA78 Gene

Subcategory (RNA class) for SNORA78 Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for SNORA78 Gene

  • Small Nucleolar RNA, H/ACA Box 78 2 3 5
  • SNORA78 2 176
  • RF01225 174
  • ACA64 3

External Ids for SNORA78 Gene

Previous GeneCards Identifiers for SNORA78 Gene

  • GC16P001961
  • GC16P001964
  • GC16P002015
  • GC16P001939
  • GC16P002090
  • GC16P002111
  • GC16P001967
  • GC16P001969
  • GC16P002267
  • GC16P002302
  • GC16P001970
  • GC16P001975
  • GC16P001982
  • GC16P001988
  • GC16P002002
  • GC16P002136
  • GC16P002180
  • GC16P002224

Summaries for SNORA78 Gene

GeneCards Summary for SNORA78 Gene

SNORA78 (Small Nucleolar RNA, H/ACA Box 78) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA78 Gene

  • Small nucleolar RNA ACA64

Additional gene information for SNORA78 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA78 Gene

Genomics for SNORA78 Gene

GeneHancer (GH) Regulatory Elements for SNORA78 Gene

Promoters and enhancers for SNORA78 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J001966 Promoter 0.4 EPDnew 750.6 +1.7 1653 0.1 ZNF121 RNF151 RPS2 SNORA78 SYNGR3 ENSG00000277602
GH16J001958 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 0.6 -2.6 -2583 8 SIN3A ZNF24 ZBTB40 SP1 CTCF SREBF1 SIX5 ZBTB6 RBPJ SMARCE1 ENSG00000255513 SNORA64 RPS2 NDUFB10 NONHSAG018290.2 SNORA10 lnc-RPL3L-3 ENSG00000261505 TELO2 CRAMP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA78 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA78 gene promoter:
  • c-Ets-1
  • MAZR
  • MyoD
  • NF-1
  • NF-1/L
  • NF-kappaB1
  • Pax-5
  • SRF
  • SRF (504 AA)

Genomic Locations for SNORA78 Gene

Genomic Locations for SNORA78 Gene
chr16:1,965,184-1,965,310
(GRCh38/hg38)
Size:
127 bases
Orientation:
Plus strand
chr16:2,014,960-2,015,510
(GRCh37/hg19)
Size:
551 bases
Orientation:
Plus strand

Genomic View for SNORA78 Gene

Genes around SNORA78 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA78 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA78 Gene

Proteins for SNORA78 Gene

Post-translational modifications for SNORA78 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA78 Gene

Domains & Families for SNORA78 Gene

Gene Families for SNORA78 Gene

genes like me logo Genes that share domains with SNORA78: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA78 Gene

Function for SNORA78 Gene

Phenotypes From GWAS Catalog for SNORA78 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA78 Gene

Localization for SNORA78 Gene

Gene Ontology (GO) - Cellular Components for SNORA78 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA78: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA78 Gene

Pathways & Interactions for SNORA78 Gene

PathCards logo

SuperPathways for SNORA78 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA78 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA78: view

No data available for Pathways by source and SIGNOR curated interactions for SNORA78 Gene

Drugs & Compounds for SNORA78 Gene

No Compound Related Data Available

Transcripts for SNORA78 Gene

mRNA/cDNA for SNORA78 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA78 Gene

No ASD Table

Relevant External Links for SNORA78 Gene

GeneLoc Exon Structure for
SNORA78
ECgene alternative splicing isoforms for
SNORA78

Expression for SNORA78 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA78 Gene

mRNA expression in normal human tissues for SNORA78 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA78 Gene:

SNORA78

SOURCE GeneReport for Unigene cluster for SNORA78 Gene:

Hs.707294
genes like me logo Genes that share expression patterns with SNORA78: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA78 Gene

Orthologs for SNORA78 Gene

Evolution for SNORA78 Gene

ENSEMBL:
Gene Tree for SNORA78 (if available)
TreeFam:
Gene Tree for SNORA78 (if available)

No data available for Orthologs for SNORA78 Gene

Paralogs for SNORA78 Gene

No data available for Paralogs for SNORA78 Gene

Variants for SNORA78 Gene

Sequence variations from dbSNP and Humsavar for SNORA78 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000994330 -- 1,963,995(+) G/A upstream_transcript_variant
rs1001274604 -- 1,963,822(+) C/G/T upstream_transcript_variant
rs1001755957 -- 1,964,845(+) G/A upstream_transcript_variant
rs1003786438 -- 1,964,877(+) T/A upstream_transcript_variant
rs1003892482 -- 1,965,717(+) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA78 Gene

Variant ID Type Subtype PubMed ID
dgv336n27 CNV loss 19166990
dgv4858n54 CNV loss 21841781
esv2422427 CNV duplication 17116639
nsv1160329 CNV deletion 26073780
nsv471070 CNV gain 18288195
nsv571179 CNV loss 21841781
nsv833120 CNV loss 17160897
nsv952901 CNV deletion 24416366
nsv984249 CNV duplication 23825009

Additional Variant Information for SNORA78 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA78

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA78 Gene

Disorders for SNORA78 Gene

Additional Disease Information for SNORA78

No disorders were found for SNORA78 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA78 Gene

Publications for SNORA78 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 56
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 56
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56

Products for SNORA78 Gene

Sources for SNORA78 Gene