Aliases for SNORA75 Gene

Subcategory (RNA class) for SNORA75 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORA75 Gene

  • Small Nucleolar RNA, H/ACA Box 75 2 3 5
  • SNORA75 2 5 170
  • SNORA75A 2 3
  • U23 2 3
  • U23 Small Nucleolar RNA 3
  • U23 SnoRNA 3
  • SNODB179 177
  • RF00072 168

External Ids for SNORA75 Gene

Previous GeneCards Identifiers for SNORA75 Gene

  • GC02M232028
  • GC02M232320
  • GC02M224161

Summaries for SNORA75 Gene

GeneCards Summary for SNORA75 Gene

SNORA75 (Small Nucleolar RNA, H/ACA Box 75) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORA75 include Colon Sarcoma and Schimmelpenning-Feuerstein-Mims Syndrome.

Rfam classification for SNORA75 Gene

  • Small nucleolar RNA SNORA75

Additional gene information for SNORA75 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA75 Gene

Genomics for SNORA75 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA75 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA75 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA75 gene promoter:
  • AML1a
  • TBP

Genomic Locations for SNORA75 Gene

Genomic Locations for SNORA75 Gene
chr2:231,455,800-231,455,936
(GRCh38/hg38)
Size:
137 bases
Orientation:
Minus strand
chr2:232,320,511-232,320,647
(GRCh37/hg19)
Size:
137 bases
Orientation:
Minus strand

Genomic View for SNORA75 Gene

Genes around SNORA75 on UCSC Golden Path with GeneCards custom track
SNORA75 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA75 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA75 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA75 Gene

Proteins for SNORA75 Gene

Post-translational modifications for SNORA75 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA75 Gene

Domains & Families for SNORA75 Gene

Gene Families for SNORA75 Gene

genes like me logo Genes that share domains with SNORA75: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA75 Gene

Function for SNORA75 Gene

Phenotypes From GWAS Catalog for SNORA75 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA75 Gene

Localization for SNORA75 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA75 gene
Compartment Confidence
nucleus 2
plasma membrane 1
extracellular 1
cytoskeleton 1
mitochondrion 1
cytosol 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for SNORA75 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA75: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA75 Gene

Pathways & Interactions for SNORA75 Gene

PathCards logo

SuperPathways for SNORA75 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA75 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA75: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA75 Gene

Drugs & Compounds for SNORA75 Gene

No Compound Related Data Available

Transcripts for SNORA75 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA75 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004640CB_9606 snoRNA 137 7

HGNC: 32661,

RefSeq: NR_002921,

Ensembl: ENST00000384158 (view in UCSC) ,

Rfam: RF00072,

snoDB: SNODB179,

snOPY: Homo_sapiens300508,

ENA: AJ007015.1:1..137:ncRNA,

SNORA75 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA75 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA75 Gene

No ASD Table

Relevant External Links for SNORA75 Gene

GeneLoc Exon Structure for
SNORA75

Expression for SNORA75 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA75 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA75

SOURCE GeneReport for Unigene cluster for SNORA75 Gene:

Hs.674388
genes like me logo Genes that share expression patterns with SNORA75: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA75 Gene

Orthologs for SNORA75 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA75 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA75 31
  • 100 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA75 31
  • 91 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snora75 31
  • 89 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA75 31
  • 89 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA75 31
  • 69 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORA75 31
  • 66 (a)
OneToOne
Chicken
(Gallus gallus)
Aves SNORA75 31
  • 59 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia SNORA75 31
  • 60 (a)
OneToOne
Zebrafish
(Danio rerio)
Actinopterygii SNORA75 31
  • 65 (a)
OneToOne
Species where no ortholog for SNORA75 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA75 Gene

ENSEMBL:
Gene Tree for SNORA75 (if available)
TreeFam:
Gene Tree for SNORA75 (if available)

Paralogs for SNORA75 Gene

No data available for Paralogs for SNORA75 Gene

Variants for SNORA75 Gene

Additional dbSNP identifiers (rs#s) for SNORA75 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA75 Gene

Variant ID Type Subtype PubMed ID
nsv834567 CNV gain 17160897

Additional Variant Information for SNORA75 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA75

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA75 Gene

Disorders for SNORA75 Gene

MalaCards: The human disease database

(5) MalaCards diseases for SNORA75 Gene - From: DISEASES

Disorder Aliases PubMed IDs
colon sarcoma
  • colonic sarcoma
schimmelpenning-feuerstein-mims syndrome
  • sfm
vestibulocochlear nerve disease
  • acoustic nerve disease
vestibular neuronitis
  • epidemic neurolabyrinthitis
c syndrome
  • opitz trigonocephaly syndrome
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORA75

genes like me logo Genes that share disorders with SNORA75: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA75 Gene

Publications for SNORA75 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
  4. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. (PMID: 9182768) Ganot P … Kiss T (Cell 1997) 3

Products for SNORA75 Gene

Sources for SNORA75 Gene