Aliases for SNORA73B Gene

Subcategory (RNA class) for SNORA73B Gene

snoRNA

Number of RNA Genes sources:

5 / 17

Aliases for SNORA73B Gene

  • Small Nucleolar RNA, H/ACA Box 73B 2 3 5
  • SNORA73B 2 5 170
  • RNA, U105A Small Nucleolar 2 3
  • RNA, U17b Small Nucleolar 2 3
  • U17B 2 3
  • E1c 2 3
  • RNA, U17b Small Nuclear 3
  • HSALNG0002067 164
  • Lnc-PHACTR4-3 165
  • SNODB384 177
  • SNODB388 177
  • RNU105A 3
  • RF00045 168
  • RNU17B 3
  • 105A 3

External Ids for SNORA73B Gene

Previous HGNC Symbols for SNORA73B Gene

  • RNU17B
  • RNU105A

Previous GeneCards Identifiers for SNORA73B Gene

  • GC01U901294
  • GC01P028711
  • GC01P028838
  • GC01P028839
  • GC01P028845
  • GC01P028854
  • GC01P028862

Summaries for SNORA73B Gene

GeneCards Summary for SNORA73B Gene

SNORA73B (Small Nucleolar RNA, H/ACA Box 73B) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORA73B include Pulmonary Systemic Sclerosis and St. Louis Encephalitis.

Rfam classification for SNORA73B Gene

  • Small nucleolar RNA SNORA73 family

Additional gene information for SNORA73B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA73B Gene

Genomics for SNORA73B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA73B Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA73B on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORA73B Gene

Genomic Locations for SNORA73B Gene
chr1:28,508,558-28,508,762
(GRCh38/hg38)
Size:
205 bases
Orientation:
Plus strand
chr1:28,835,071-28,835,274
(GRCh37/hg19)
Size:
204 bases
Orientation:
Plus strand

Genomic View for SNORA73B Gene

Genes around SNORA73B on UCSC Golden Path with GeneCards custom track
SNORA73B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA73B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA73B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA73B Gene

Proteins for SNORA73B Gene

Post-translational modifications for SNORA73B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA73B Gene

Domains & Families for SNORA73B Gene

Gene Families for SNORA73B Gene

genes like me logo Genes that share domains with SNORA73B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA73B Gene

Function for SNORA73B Gene

Phenotypes From GWAS Catalog for SNORA73B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA73B Gene

Localization for SNORA73B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA73B gene
Compartment Confidence
plasma membrane 1
extracellular 1
cytoskeleton 1
mitochondrion 1
nucleus 1
endoplasmic reticulum 1
endosome 1
cytosol 1
lysosome 1

Gene Ontology (GO) - Cellular Components for SNORA73B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA73B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA73B Gene

Pathways & Interactions for SNORA73B Gene

PathCards logo

SuperPathways for SNORA73B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA73B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA73B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA73B Gene

Drugs & Compounds for SNORA73B Gene

No Compound Related Data Available

Transcripts for SNORA73B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA73B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006422E6_9606 snoRNA 204 6

HGNC: 10116,

Ensembl: ENST00000363217 (view in UCSC) ,

LNCipedia: lnc-PHACTR4-3:1,

Rfam: RF00045,

snoDB: SNODB388,

snOPY: Homo_sapiens300650,

URS0000ABD8E7_9606 snoRNA 205 3

RefSeq: NR_004404,

LncBook: HSALNT0003877,

snoDB: SNODB384,

URS0000644C65_9606 snoRNA 203 1

Rfam: RF00045,

SNORA73B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA73B Gene

No ASD Table

Relevant External Links for SNORA73B Gene

GeneLoc Exon Structure for
SNORA73B

No data available for mRNA/cDNA for SNORA73B Gene

Expression for SNORA73B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA73B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA73B

Evidence on tissue expression from TISSUES for SNORA73B Gene

  • Urine(2.2)
genes like me logo Genes that share expression patterns with SNORA73B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA73B Gene

Orthologs for SNORA73B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA73B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA73 31
  • 100 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORA73 31 31 31
  • 86 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA73 31 31 31
  • 78 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm25483 31
  • 66 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves SNORA73 31
  • 77 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA73 31 31
  • 75 (a)
ManyToMany
Species where no ortholog for SNORA73B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORA73B Gene

ENSEMBL:
Gene Tree for SNORA73B (if available)
TreeFam:
Gene Tree for SNORA73B (if available)

Paralogs for SNORA73B Gene

No data available for Paralogs for SNORA73B Gene

Variants for SNORA73B Gene

Additional dbSNP identifiers (rs#s) for SNORA73B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA73B Gene

Variant ID Type Subtype PubMed ID
esv2657760 CNV deletion 23128226
esv2657760 CNV deletion 23128226
esv3559994 CNV deletion 23714750
esv3559994 CNV deletion 23714750
esv3585585 CNV loss 21293372
esv3585585 CNV loss 21293372
esv3585587 CNV gain 21293372
esv3585587 CNV gain 21293372
nsv545916 CNV gain 21841781
nsv545916 CNV gain 21841781
nsv545919 CNV loss 21841781
nsv545919 CNV loss 21841781
nsv947421 CNV duplication 23825009
nsv947421 CNV duplication 23825009

Additional Variant Information for SNORA73B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA73B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA73B Gene

Disorders for SNORA73B Gene

MalaCards: The human disease database

(3) MalaCards diseases for SNORA73B Gene - From: DISEASES

Disorder Aliases PubMed IDs
pulmonary systemic sclerosis
  • lung disease with systemic sclerosis
st. louis encephalitis
  • neuroinvasive st. louis encephalitis virus infection
murray valley encephalitis
  • australian encephalitis
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORA73B

genes like me logo Genes that share disorders with SNORA73B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA73B Gene

Publications for SNORA73B Gene

  1. Small nucleolar RNAs encoded by introns of the human cell cycle regulatory gene RCC1. (PMID: 8335005) Kiss T … Filipowicz W (The EMBO journal 1993) 2 3
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  3. SIRT7-dependent deacetylation of the U3-55k protein controls pre-rRNA processing. (PMID: 26867678) Chen S … Voit R (Nature communications 2016) 3
  4. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 3
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA73B Gene

Sources for SNORA73B Gene