Aliases for SNORA73A Gene

Subcategory (RNA class) for SNORA73A Gene

snoRNA

Quality Score for this RNA gene is

18

Aliases for SNORA73A Gene

  • Small Nucleolar RNA, H/ACA Box 73A 2 3 5
  • RNA, U17a Small Nucleolar 2 3
  • SNORA73A 2 176
  • RNA, Small Nucleolar E1 3
  • NONHSAG000835 94
  • HSALNG0002066 169
  • RF00045 174
  • RNU17A 3
  • SNHG3 170
  • E1-7 3
  • U17A 3
  • RNE1 3
  • E1b 3
  • E1 3

External Ids for SNORA73A Gene

Previous HGNC Symbols for SNORA73A Gene

  • RNE1
  • RNU17A

Previous GeneCards Identifiers for SNORA73A Gene

  • GC01P028706
  • GC01P028840
  • GC01P028842
  • GC01P027088
  • GC01P028846
  • GC01P028850
  • GC01P028851
  • GC01P028852
  • GC01P028853
  • GC01P028855
  • GC01P028864

Summaries for SNORA73A Gene

GeneCards Summary for SNORA73A Gene

SNORA73A (Small Nucleolar RNA, H/ACA Box 73A) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA73A Gene

  • Small nucleolar RNA SNORA73 family

Additional gene information for SNORA73A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA73A Gene

Genomics for SNORA73A Gene

GeneHancer (GH) Regulatory Elements for SNORA73A Gene

Promoters and enhancers for SNORA73A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J028504 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.8 783 6.7 PPP1R10 GTF3C2 FOXK2 SIN3A ZNF24 ZBTB40 ZBTB6 RBPJ SMARCE1 POLR2A SNORA73B RCC1 L16792-001 L16792-002 NONHSAG000836.2 SNORA73A GMEB1 SRSF4 TRNAU1AP PHACTR4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA73A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA73A gene promoter:
  • MRF-2
  • NF-kappaB
  • NF-kappaB1

Genomic Locations for SNORA73A Gene

Genomic Locations for SNORA73A Gene
chr1:28,507,365-28,507,571
(GRCh38/hg38)
Size:
207 bases
Orientation:
Plus strand
chr1:28,832,492-28,837,404
(GRCh37/hg19)
Size:
4,913 bases
Orientation:
Plus strand

Genomic View for SNORA73A Gene

Genes around SNORA73A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA73A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA73A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA73A Gene

Proteins for SNORA73A Gene

Post-translational modifications for SNORA73A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA73A Gene

Domains & Families for SNORA73A Gene

Gene Families for SNORA73A Gene

genes like me logo Genes that share domains with SNORA73A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA73A Gene

Function for SNORA73A Gene

Phenotypes From GWAS Catalog for SNORA73A Gene

Gene Ontology (GO) - Molecular Function for SNORA73A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 10757788
genes like me logo Genes that share ontologies with SNORA73A: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA73A Gene

Localization for SNORA73A Gene

Gene Ontology (GO) - Cellular Components for SNORA73A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 10757788
GO:0005730 nucleolus IEA --
GO:0072588 box H/ACA RNP complex IDA 10757788
genes like me logo Genes that share ontologies with SNORA73A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA73A Gene

Pathways & Interactions for SNORA73A Gene

PathCards logo

SuperPathways for SNORA73A Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA73A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA73A: view

No data available for Pathways by source and SIGNOR curated interactions for SNORA73A Gene

Drugs & Compounds for SNORA73A Gene

No Compound Related Data Available

Transcripts for SNORA73A Gene

mRNA/cDNA for SNORA73A Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) NONCODE transcripts :
(5) RNACentral transcripts :
(4) ENA transcripts :
(1) LncBook transcripts :
(2) LNCipedia transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA73A Gene

No ASD Table

Relevant External Links for SNORA73A Gene

GeneLoc Exon Structure for
SNORA73A
ECgene alternative splicing isoforms for
SNORA73A

Expression for SNORA73A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA73A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA73A Gene:

SNORA73A
genes like me logo Genes that share expression patterns with SNORA73A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA73A Gene

Orthologs for SNORA73A Gene

Evolution for SNORA73A Gene

ENSEMBL:
Gene Tree for SNORA73A (if available)
TreeFam:
Gene Tree for SNORA73A (if available)

No data available for Orthologs for SNORA73A Gene

Paralogs for SNORA73A Gene

No data available for Paralogs for SNORA73A Gene

Variants for SNORA73A Gene

Sequence variations from dbSNP and Humsavar for SNORA73A Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000718042 -- 28,505,896(+) G/T upstream_transcript_variant
rs1001089666 -- 28,506,792(+) G/A upstream_transcript_variant
rs1001381360 -- 28,505,722(+) A/T upstream_transcript_variant
rs1001696462 -- 28,506,016(+) A/G upstream_transcript_variant
rs1002146857 -- 28,505,788(+) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA73A Gene

Variant ID Type Subtype PubMed ID
esv2657760 CNV deletion 23128226
esv3559994 CNV deletion 23714750
esv3585585 CNV loss 21293372
nsv545916 CNV gain 21841781
nsv545919 CNV loss 21841781
nsv947421 CNV duplication 23825009

Additional Variant Information for SNORA73A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA73A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA73A Gene

Disorders for SNORA73A Gene

Additional Disease Information for SNORA73A

No disorders were found for SNORA73A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA73A Gene

Publications for SNORA73A Gene

  1. Three small nucleolar RNAs of unique nucleotide sequences. (PMID: 8421699) Ruff EA … Eliceiri GL (Proceedings of the National Academy of Sciences of the United States of America 1993) 2 3 56
  2. Small nucleolar RNAs encoded by introns of the human cell cycle regulatory gene RCC1. (PMID: 8335005) Kiss T … Filipowicz W (The EMBO journal 1993) 2 3 56
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 56
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56
  5. In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs. (PMID: 10757788) Dragon F … Filipowicz W (Molecular and cellular biology 2000) 3 56

Products for SNORA73A Gene

Sources for SNORA73A Gene