Aliases for SNORA71E Gene

Subcategory (RNA class) for SNORA71E Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORA71E Gene

  • Small Nucleolar RNA, H/ACA Box 71E 2 3 5
  • Small Nucleolar RNA, H/ACA Box 39 2 3
  • SNORA71E 2 5
  • SNORA39 3 170
  • ACA39 2 3
  • ACA39 SnoRNA 3
  • SNODB233 177
  • SNODB504 177
  • RF00056 168

External Ids for SNORA71E Gene

Previous HGNC Symbols for SNORA71E Gene

  • SNORA39

Summaries for SNORA71E Gene

GeneCards Summary for SNORA71E Gene

SNORA71E (Small Nucleolar RNA, H/ACA Box 71E) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA71E Gene

  • Small nucleolar RNA SNORA71

Additional gene information for SNORA71E Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA71E Gene

Genomics for SNORA71E Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA71E Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J038446 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas 600.7 -0.6 -643 2.9 SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 ZNF629 TFE3 LEF1 IKZF1 SNHG11 SNORA60 SNORA71E SNHG17 ACTR5 ENSG00000224635 RALGAPB RN7SKP173 TTI1 CTNNBL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA71E on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORA71E Gene

Genomic Locations for SNORA71E Gene
chr20:38,448,083-38,448,218
(GRCh38/hg38)
Size:
136 bases
Orientation:
Plus strand

Genomic View for SNORA71E Gene

Genes around SNORA71E on UCSC Golden Path with GeneCards custom track
SNORA71E in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA71E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA71E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71E Gene

Proteins for SNORA71E Gene

Post-translational modifications for SNORA71E Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71E Gene

Domains & Families for SNORA71E Gene

Gene Families for SNORA71E Gene

genes like me logo Genes that share domains with SNORA71E: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA71E Gene

Function for SNORA71E Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71E Gene

Localization for SNORA71E Gene

Gene Ontology (GO) - Cellular Components for SNORA71E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA71E: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA71E Gene

Pathways & Interactions for SNORA71E Gene

PathCards logo

SuperPathways for SNORA71E Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA71E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA71E: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA71E Gene

Drugs & Compounds for SNORA71E Gene

No Compound Related Data Available

Transcripts for SNORA71E Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA71E Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005B5A80_9606 snoRNA 136 4

HGNC: 32632,

RefSeq: NR_002972,

snoDB: SNODB233,

ENA: AJ609475.1:1..136:ncRNA,

URS0000661CCE_9606 snoRNA 132 4

Ensembl: ENST00000365032 (view in UCSC) ,

Rfam: RF00056,

snoDB: SNODB504,

snOPY: Homo_sapiens300489,

SNORA71E in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA71E Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71E Gene

No ASD Table

Relevant External Links for SNORA71E Gene

GeneLoc Exon Structure for
SNORA71E

Expression for SNORA71E Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA71E

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71E Gene

Orthologs for SNORA71E Gene

Evolution for SNORA71E Gene

ENSEMBL:
Gene Tree for SNORA71E (if available)
TreeFam:
Gene Tree for SNORA71E (if available)

No data available for Orthologs for SNORA71E Gene

Paralogs for SNORA71E Gene

No data available for Paralogs for SNORA71E Gene

Variants for SNORA71E Gene

Additional dbSNP identifiers (rs#s) for SNORA71E Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA71E Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354

Additional Variant Information for SNORA71E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA71E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA71E Gene

Disorders for SNORA71E Gene

Additional Disease Information for SNORA71E

No disorders were found for SNORA71E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71E Gene

Publications for SNORA71E Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA71E Gene

Sources for SNORA71E Gene