Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORA71C Gene

Subcategory (RNA class) for SNORA71C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA71C Gene

  • Small Nucleolar RNA, H/ACA Box 71C 2 3 5
  • U71c 3

External Ids for SNORA71C Gene

ORGUL Members for SNORA71C Gene

Previous GeneCards Identifiers for SNORA71C Gene

  • GC20P036491
  • GC20M036503
  • GC20M037058
  • GC20M033793

Summaries for SNORA71C Gene

GeneCards Summary for SNORA71C Gene

SNORA71C (Small Nucleolar RNA, H/ACA Box 71C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA71C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA71C Gene

Genomics for SNORA71C Gene

GeneHancer (GH) Regulatory Elements for SNORA71C Gene

Promoters and enhancers for SNORA71C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I038428 Enhancer 0.5 ENCODE 550.8 +0.9 911 0.2 ZNF121 MAFF ZNF316 POLR2A MAFG MAFK EMSY GC20M038430 GC20M038431 GC20M038432 GC20M038435 GC20M038436 SNORA71A SNORA71C ENSG00000224635 SNHG17
GH20I038139 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 32.9 +273.8 273814 33.6 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF143 MCM3 SP3 NFYC TGM2 SNHG17 RALGAPB ACTR5 RN7SKP173 SNORA71A TTI1 SNORA71C RPN2 DHX35
GH20I038433 Promoter/Enhancer 1.6 Ensembl ENCODE 31.9 -5.0 -5014 2.9 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 SNHG17 GC20M038434 GC20M038437 SNORA71D ACTR5 RALGAPB ENSG00000224635 TTI1 SNORA71A SNORA71C
GH20I038960 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 22 -532.3 -532344 2.5 PKNOX1 CLOCK MLX ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 POLR2B DHX35 ENSG00000261431 ENSG00000277581 RALGAPB FAM83D SNHG17 SNORA71C RN7SKP173 ACTR5 TTI1
GH20I038031 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 22.6 +396.1 396122 3.5 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 TTI1 RPRD1B SNHG17 SNORA71A ACTR5 RALGAPB SNORA71C RN7SKP173 RPN2 RPS3P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA71C on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA71C gene promoter:

Genomic Locations for SNORA71C Gene

Genomic Locations for SNORA71C Gene
chr20:38,429,667-38,429,804
(GRCh38/hg38)
Size:
138 bases
Orientation:
Minus strand
chr20:37,058,310-37,058,447
(GRCh37/hg19)

Genomic View for SNORA71C Gene

Genes around SNORA71C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA71C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA71C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71C Gene

Proteins for SNORA71C Gene

Post-translational modifications for SNORA71C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71C Gene

Domains & Families for SNORA71C Gene

Gene Families for SNORA71C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA71C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA71C Gene

Function for SNORA71C Gene

Phenotypes From GWAS Catalog for SNORA71C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71C Gene

Localization for SNORA71C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA71C Gene

Pathways & Interactions for SNORA71C Gene

SuperPathways for SNORA71C Gene

No Data Available

Interacting Proteins for SNORA71C Gene

Gene Ontology (GO) - Biological Process for SNORA71C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA71C Gene

Drugs & Compounds for SNORA71C Gene

No Compound Related Data Available

Transcripts for SNORA71C Gene

mRNA/cDNA for SNORA71C Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA71C Gene

Small nucleolar RNA, H/ACA box 71C:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71C Gene

No ASD Table

Relevant External Links for SNORA71C Gene

GeneLoc Exon Structure for
SNORA71C
ECgene alternative splicing isoforms for
SNORA71C

Expression for SNORA71C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA71C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA71C Gene:

SNORA71C

SOURCE GeneReport for Unigene cluster for SNORA71C Gene:

Hs.711516
genes like me logo Genes that share expression patterns with SNORA71C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71C Gene

Orthologs for SNORA71C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA71 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA71 34 34
  • 84 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 34
  • 82 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA71 34
  • 79 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm26003 34
  • 79 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA71 34
  • 60 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA71 34
  • 78 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA71 34
  • 74 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA71 34 34
  • 69 (a)
ManyToMany
Species where no ortholog for SNORA71C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA71C Gene

ENSEMBL:
Gene Tree for SNORA71C (if available)
TreeFam:
Gene Tree for SNORA71C (if available)

Paralogs for SNORA71C Gene

No data available for Paralogs for SNORA71C Gene

Variants for SNORA71C Gene

Sequence variations from dbSNP and Humsavar for SNORA71C Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1001126007 -- 38,430,169(-) A/C upstream_transcript_variant
rs1001178298 -- 38,430,405(-) G/A upstream_transcript_variant
rs1001518718 -- 38,430,986(-) C/T upstream_transcript_variant
rs1003383832 -- 38,431,745(-) C/G upstream_transcript_variant
rs1005431344 -- 38,430,984(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA71C Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354

Additional Variant Information for SNORA71C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA71C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA71C Gene

Disorders for SNORA71C Gene

Additional Disease Information for SNORA71C

No disorders were found for SNORA71C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71C Gene

Publications for SNORA71C Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA71C Gene

Sources for SNORA71C Gene

Content
Loading form....