Aliases for SNORA71C Gene
Subcategory (RNA class) for SNORA71C Gene
snoRNA
Quality Score for this RNA gene is
13
External Ids for SNORA71C Gene
- HGNC: 32656
- Entrez Gene: 677839
- Ensembl: ENSG00000201512
Previous GeneCards Identifiers for SNORA71C Gene
- GC20P036491
- GC20M036503
- GC20M037058
- GC20M033793
Summaries for SNORA71C Gene
GeneCards Summary for SNORA71C Gene
SNORA71C (Small Nucleolar RNA, H/ACA Box 71C) is an RNA Gene, and is affiliated with the snoRNA class.
Additional gene information for SNORA71C Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA71C Gene
Genomics for SNORA71C Gene
GeneHancer (GH) Regulatory Elements for SNORA71C Gene
Promoters and enhancers for SNORA71C Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORA71C on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the SNORA71C gene promoter:
-
- POU3F2
- GATA-1
- Elk-1
- GR
- GR-alpha
- GR-beta
- HSF1short
- HSF1 (long)
Regulatory Element Products
Genomic Locations for SNORA71C Gene
Genomic Locations for SNORA71C Gene
- chr20:38,429,667-38,429,804
- (GRCh38/hg38)
- Size:
- 138 bases
- Orientation:
- Minus strand
- chr20:37,058,310-37,058,447
- (GRCh37/hg19)
- Size:
- 138 bases
- Orientation:
- Minus strand
Genomic View for SNORA71C Gene
Genes around SNORA71C on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 20q11.23 by Entrez Gene
- 20q11.23 by HGNC
- 20q11.23 by Ensembl
SNORA71C Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORA71C Gene
Proteins for SNORA71C Gene
Post-translational modifications for SNORA71C Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for SNORA71C
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORA71C
- Origene Custom Protein Services for SNORA71C
- Search GeneTex for Proteins for SNORA71C
No data available for DME Specific Peptides for SNORA71C Gene
Domains & Families for SNORA71C Gene
Gene Families for SNORA71C Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA71C Gene
Function for SNORA71C Gene
Phenotypes From GWAS Catalog for SNORA71C Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for SNORA71C
-
CRISPR Products
- Browse CRISPR knockouts for SNORA71C
- Applied Biological Materials CRISPR for SNORA71C
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
Inhibitory RNA Products
Clone Products
- GenScript: Custom all cDNA clones Services for SNORA71C
- VectorBuilder custom plasmid, inducible vectors for SNORA71C
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNORA71C
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for SNORA71C
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71C Gene
Localization for SNORA71C Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA71C Gene
Transcripts for SNORA71C Gene
mRNA/cDNA for SNORA71C Gene
- (1) Additional mRNA sequences :
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000364642 134 bps (uc002xin.2)
- (2) RNA Central transcripts :
Unigene Clusters for SNORA71C Gene
- Small nucleolar RNA, H/ACA box 71C:
- Representative Sequences:
CRISPR Products
- Browse CRISPR knockouts for SNORA71C
- Applied Biological Materials CRISPR for SNORA71C
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
Inhibitory RNA Products
Clone Products
- GenScript: Custom all cDNA clones Services for SNORA71C
- VectorBuilder custom plasmid, inducible vectors for SNORA71C
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNORA71C
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for SNORA71C
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for SNORA71C Gene
NURSA nuclear receptor signaling pathways regulating expression of SNORA71C Gene:
SNORA71CSOURCE GeneReport for Unigene cluster for SNORA71C Gene:
Hs.711516Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71C Gene
Orthologs for SNORA71C Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | SNORA71 34 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | SNORA71 34 34 |
|
ManyToMany | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | SNORA71 34 |
|
OneToMany | |
| oppossum (Monodelphis domestica) |
Mammalia | SNORA71 34 |
|
OneToMany | |
| mouse (Mus musculus) |
Mammalia | Gm26003 34 |
|
ManyToMany | |
| dog (Canis familiaris) |
Mammalia | SNORA71 34 |
|
ManyToMany | |
| chicken (Gallus gallus) |
Aves | SNORA71 34 |
|
OneToMany | |
| lizard (Anolis carolinensis) |
Reptilia | SNORA71 34 |
|
OneToMany | |
| zebrafish (Danio rerio) |
Actinopterygii | SNORA71 34 34 |
|
ManyToMany |
- Species where no ortholog for SNORA71C was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for SNORA71C Gene
No data available for Paralogs for SNORA71C Gene
Variants for SNORA71C Gene
| SNP ID | Clin | Chr 20 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1001126007 | -- | 38,430,169(-) | A/C | upstream_transcript_variant | |
| rs1001178298 | -- | 38,430,405(-) | G/A | upstream_transcript_variant | |
| rs1001518718 | -- | 38,430,986(-) | C/T | upstream_transcript_variant | |
| rs1003383832 | -- | 38,431,745(-) | C/G | upstream_transcript_variant | |
| rs1005431344 | -- | 38,430,984(-) | G/A | upstream_transcript_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2758794 | CNV | gain | 17122850 |
| esv35121 | CNV | gain | 17911159 |
| nsv1058457 | CNV | loss | 25217958 |
| nsv1063495 | CNV | gain | 25217958 |
| nsv509769 | CNV | insertion | 20534489 |
| nsv817893 | CNV | gain | 17921354 |
Additional Variant Information for SNORA71C Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORA71C
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA71C Gene
Disorders for SNORA71C Gene
Additional Disease Information for SNORA71C
No disorders were found for SNORA71C Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71C Gene
Publications for SNORA71C Gene
- snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
- Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
Products for SNORA71C Gene
- Browse R&D Systems for Antibodies
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- Browse R&D Systems for biochemical assays
- Browse Human Proteins and Enzymes
- Browse Primary Antibodies
- Browse Proteins and Enzymes
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for SNORA71C
- VectorBuilder custom plasmid, inducible vectors for SNORA71C
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNORA71C
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORA71C
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Sources for SNORA71C Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
- (159) GlyConnect
- (160) Aminode
- (161) GeneCopoeia
- (162) GPS-Prot
- (163) RNACentral
- (164) LncRNADisease
- (165) LOVD
- (166) miR2Disease
- (167) DiseaseEnhancer
- (168) Boster Bio
- (169) Biorbyt