Aliases for SNORA71C Gene

Subcategory (RNA class) for SNORA71C Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORA71C Gene

  • Small Nucleolar RNA, H/ACA Box 71C 2 3 5
  • SNORA71C 2 5 170
  • U71c 2 3
  • SNODB1322 177
  • SNODB854 177
  • RF00056 168

External Ids for SNORA71C Gene

Previous GeneCards Identifiers for SNORA71C Gene

  • GC20P036491
  • GC20M036503
  • GC20M037058
  • GC20M033793

Summaries for SNORA71C Gene

GeneCards Summary for SNORA71C Gene

SNORA71C (Small Nucleolar RNA, H/ACA Box 71C) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA71C Gene

  • Small nucleolar RNA SNORA71

Additional gene information for SNORA71C Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA71C Gene

Genomics for SNORA71C Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA71C Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA71C on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA71C gene promoter:
  • Elk-1
  • GATA-1
  • GR
  • GR-alpha
  • GR-beta
  • HSF1 (long)
  • HSF1short
  • POU3F2

Genomic Locations for SNORA71C Gene

Genomic Locations for SNORA71C Gene
chr20:38,429,667-38,429,804
(GRCh38/hg38)
Size:
138 bases
Orientation:
Minus strand
chr20:37,058,310-37,058,447
(GRCh37/hg19)
Size:
138 bases
Orientation:
Minus strand

Genomic View for SNORA71C Gene

Genes around SNORA71C on UCSC Golden Path with GeneCards custom track
SNORA71C in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA71C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA71C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71C Gene

Proteins for SNORA71C Gene

Post-translational modifications for SNORA71C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71C Gene

Domains & Families for SNORA71C Gene

Gene Families for SNORA71C Gene

genes like me logo Genes that share domains with SNORA71C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA71C Gene

Function for SNORA71C Gene

Phenotypes From GWAS Catalog for SNORA71C Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71C Gene

Localization for SNORA71C Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA71C gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORA71C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA71C: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA71C Gene

Pathways & Interactions for SNORA71C Gene

PathCards logo

SuperPathways for SNORA71C Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA71C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA71C: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA71C Gene

Drugs & Compounds for SNORA71C Gene

No Compound Related Data Available

Transcripts for SNORA71C Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA71C Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006BEDDC_9606 snoRNA 134 4

Ensembl: ENST00000364642 (view in UCSC) ,

Rfam: RF00056,

snoDB: SNODB854,

snOPY: Homo_sapiens300487,

URS000075C26A_9606 snoRNA 138 3

HGNC: 32656,

RefSeq: NR_003017,

snoDB: SNODB1322,

SNORA71C in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71C Gene

No ASD Table

Relevant External Links for SNORA71C Gene

GeneLoc Exon Structure for
SNORA71C

No data available for mRNA/cDNA for SNORA71C Gene

Expression for SNORA71C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA71C Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA71C

SOURCE GeneReport for Unigene cluster for SNORA71C Gene:

Hs.711516
genes like me logo Genes that share expression patterns with SNORA71C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71C Gene

Orthologs for SNORA71C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71C Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA71 31
  • 99 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA71 31 31
  • 89 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 31
  • 82 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Gm26003 31
  • 79 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA71 31
  • 79 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia SNORA71 31
  • 60 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves SNORA71 31
  • 78 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA71 31
  • 74 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA71 31 31
  • 68 (a)
ManyToMany
Species where no ortholog for SNORA71C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA71C Gene

ENSEMBL:
Gene Tree for SNORA71C (if available)
TreeFam:
Gene Tree for SNORA71C (if available)

Paralogs for SNORA71C Gene

No data available for Paralogs for SNORA71C Gene

Variants for SNORA71C Gene

Additional dbSNP identifiers (rs#s) for SNORA71C Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA71C Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354

Additional Variant Information for SNORA71C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA71C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA71C Gene

Disorders for SNORA71C Gene

Additional Disease Information for SNORA71C

No disorders were found for SNORA71C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71C Gene

Publications for SNORA71C Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA71C Gene

Sources for SNORA71C Gene