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Aliases for SNORA71C Gene
Data sources for SNORA71C Gene:
Subcategory (RNA class) for SNORA71C Gene
snoRNA
Aliases for SNORA71C Gene
- Small Nucleolar RNA, H/ACA Box 71C (HGNC, NCBI Entrez Gene, Ensembl)
- SNORA71C (Ensembl, snOPY)
- U71c (HGNC, NCBI Entrez Gene)
- SNODB1322 (snoDB)
- SNODB854 (snoDB)
- RF00056 (Rfam)
External Ids for SNORA71C Gene
- HGNC: 32656
- NCBI Entrez Gene: 677839
- Ensembl: ENSG00000201512
Previous GeneCards Identifiers for SNORA71C Gene
- GC20P036491
- GC20M036503
- GC20M037058
- GC20M033793
Summaries for SNORA71C Gene
GeneCards Summary for SNORA71C Gene
SNORA71C (Small Nucleolar RNA, H/ACA Box 71C) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORA71C Gene
-
Small nucleolar RNA SNORA71
Additional gene information for SNORA71C Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA71C Gene
Genomics for SNORA71C Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORA71C Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORA71C on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNORA71C gene promoter:
-
- Elk-1
- GATA-1
- GR
- GR-alpha
- GR-beta
- HSF1 (long)
- HSF1short
- POU3F2
Genomic Locations for SNORA71C Gene
Latest Assembly
- chr20:38,429,667-38,429,804
- (GRCh38/hg38)
- Size:
- 138 bases
- Orientation:
- Minus strand
Previous Assembly
- chr20:37,058,310-37,058,447
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 138 bases
- Orientation:
- Minus strand
- chr20:37,058,313-37,058,446
- (GRCh37/hg19 by Ensembl)
- Size:
- 134 bases
- Orientation:
- Minus strand
Genomic View for SNORA71C Gene
Genes around SNORA71C on UCSC Golden Path with GeneCards custom track
SNORA71C in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 20q11.23 by HGNC
- 20q11.23 by Entrez Gene
- 20q11.23 by Ensembl
SNORA71C Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORA71C Gene
Proteins for SNORA71C Gene
Post-translational modifications for SNORA71C Gene
No Post-translational modifications
No data available for DME Specific Peptides for SNORA71C Gene
Domains & Families for SNORA71C Gene
Gene Families for SNORA71C Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA71C Gene
Function for SNORA71C Gene
Phenotypes From GWAS Catalog for SNORA71C Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORA71C - Starting at $85 >
- * SNORA71C CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SNORA71C - Starting at $45 >
- * SNORA71C as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71C Gene
Localization for SNORA71C Gene
| Compartment | Confidence |
|---|---|
| nucleus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA71C Gene
Pathways & Interactions for SNORA71C Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA71C Gene
Transcripts for SNORA71C Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA71C Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00006BEDDC_9606 | snoRNA | 134 | 4 |
Ensembl: ENST00000364642 (view in UCSC) , Rfam: RF00056, snoDB: SNODB854, snOPY: Homo_sapiens300487, |
| URS000075C26A_9606 | snoRNA | 138 | 2 |
RefSeq: NR_003017, snoDB: SNODB1322, |
| URS0001BBEC89_9606 | snoRNA | 134 | 1 |
Rfam: RF00056, |
SNORA71C in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORA71C - Starting at $85 >
- * SNORA71C CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SNORA71C - Starting at $45 >
- * SNORA71C as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Relevant External Links for SNORA71C Gene
- GeneLoc Exon Structure for
- SNORA71C
No data available for mRNA/cDNA for SNORA71C Gene
Expression for SNORA71C Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA71C
SOURCE GeneReport for Unigene cluster for SNORA71C Gene:
Hs.711516Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71C Gene
Orthologs for SNORA71C Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SNORA71 31 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | SNORA71 31 31 |
|
ManyToMany | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | SNORA71 31 |
|
OneToMany | |
| Mouse (Mus musculus) |
Mammalia | Gm26003 31 |
|
ManyToMany | |
| Oppossum (Monodelphis domestica) |
Mammalia | SNORA71 31 |
|
OneToMany | |
| Dog (Canis familiaris) |
Mammalia | SNORA71 31 |
|
ManyToMany | |
| Chicken (Gallus gallus) |
Aves | SNORA71 31 |
|
OneToMany | |
| Lizard (Anolis carolinensis) |
Reptilia | SNORA71 31 |
|
OneToMany | |
| Zebrafish (Danio rerio) |
Actinopterygii | SNORA71 31 31 |
|
ManyToMany |
- Species where no ortholog for SNORA71C was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
Paralogs for SNORA71C Gene
No data available for Paralogs for SNORA71C Gene
Variants for SNORA71C Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2758794 | CNV | gain | 17122850 |
| esv35121 | CNV | gain | 17911159 |
| nsv1058457 | CNV | loss | 25217958 |
| nsv1063495 | CNV | gain | 25217958 |
| nsv509769 | CNV | insertion | 20534489 |
| nsv817893 | CNV | gain | 17921354 |
Additional Variant Information for SNORA71C Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORA71C
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA71C Gene
Disorders for SNORA71C Gene
Additional Disease Information for SNORA71C
No disorders were found for SNORA71C Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71C Gene
Publications for SNORA71C Gene
- snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
- Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
ExternalLinks
Products for SNORA71C Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORA71C
- Origene Custom Protein Services for SNORA71C
- Browse OriGene Inhibitory RNA Products For SNORA71C
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORA71C
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORA71C
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORA71C
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORA71C
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORA71C
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORA71C
Sources for SNORA71C Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB