Aliases for SNORA71C Gene

Data sources for SNORA71C Gene:

Subcategory (RNA class) for SNORA71C Gene

snoRNA

Aliases for SNORA71C Gene

External Ids for SNORA71C Gene

Previous GeneCards Identifiers for SNORA71C Gene

  • GC20P036491
  • GC20M036503
  • GC20M037058
  • GC20M033793

Summaries for SNORA71C Gene

GeneCards Summary for SNORA71C Gene

SNORA71C (Small Nucleolar RNA, H/ACA Box 71C) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA71C Gene

  • Small nucleolar RNA SNORA71

Additional gene information for SNORA71C Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA71C Gene

Genomics for SNORA71C Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA71C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J038428 Enhancer 0.5 ENCODE 250.7 +0.9 911 0.2 MAFF ZNF316 MAFK MAFG ZNF121 EMSY SNORA71A SNORA71C ENSG00000224635 SNHG17 RALGAPB LBP
GH20J038430 Enhancer 0.4 Ensembl 250.7 -1.4 -1397 0.8 POLR2A HIC1 ZNF600 SNORA71C SNHG17 SNORA71D RALGAPB LBP
GH20J038960 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 30.1 -532.6 -532644 3.1 TBP ZBTB10 SP1 MXD4 FEZF1 CEBPA NR2C1 DEK MNT SMAD5 DHX35 ENSG00000277581 ENSG00000261431 RALGAPB ACTR5 SNHG17 TTI1 SNORA71C RN7SKP173 FAM83D
GH20J038139 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 24.3 +273.8 273814 33.6 ZSCAN16 TBP MXD4 CEBPA MNT DEK IKZF1 HES1 ZFP64 MBD2 TGM2 RALGAPB ACTR5 RN7SKP173 SNHG17 TTI1 SNORA71A SNORA71C DHX35 RPN2
GH20J038431 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas 31.4 -4.2 -4236 4.5 ZSCAN16 CHD2 TBP ZBTB10 BCL11A SP1 MXD4 CEBPA SIX5 NR2C1 SNHG17 HSALNG0129984 SNORA71D RALGAPB ACTR5 ENSG00000224635 TTI1 SNORA71C RN7SKP173 SNORA71A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA71C on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA71C gene promoter:
  • Elk-1
  • GATA-1
  • GR
  • GR-alpha
  • GR-beta
  • HSF1 (long)
  • HSF1short
  • POU3F2

Genomic Locations for SNORA71C Gene

Latest Assembly
chr20:38,429,667-38,429,804
(GRCh38/hg38)
Size:
138 bases
Orientation:
Minus strand

Previous Assembly
chr20:37,058,310-37,058,447
(GRCh37/hg19 by Entrez Gene)
Size:
138 bases
Orientation:
Minus strand

chr20:37,058,313-37,058,446
(GRCh37/hg19 by Ensembl)
Size:
134 bases
Orientation:
Minus strand

Genomic View for SNORA71C Gene

Genes around SNORA71C on UCSC Golden Path with GeneCards custom track
SNORA71C in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORA71C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA71C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71C Gene

Proteins for SNORA71C Gene

Post-translational modifications for SNORA71C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71C Gene

Domains & Families for SNORA71C Gene

Gene Families for SNORA71C Gene

genes like me logo Genes that share domains with SNORA71C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA71C Gene

Function for SNORA71C Gene

Phenotypes From GWAS Catalog for SNORA71C Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71C Gene

Localization for SNORA71C Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA71C gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORA71C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA71C: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA71C Gene

Pathways & Interactions for SNORA71C Gene

PathCards logo

SuperPathways for SNORA71C Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA71C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA71C: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA71C Gene

Drugs & Compounds for SNORA71C Gene

No Compound Related Data Available

Transcripts for SNORA71C Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA71C Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006BEDDC_9606 snoRNA 134 4

Ensembl: ENST00000364642 (view in UCSC) ,

Rfam: RF00056,

snoDB: SNODB854,

snOPY: Homo_sapiens300487,

URS000075C26A_9606 snoRNA 138 2

RefSeq: NR_003017,

snoDB: SNODB1322,

URS0001BBEC89_9606 snoRNA 134 1

Rfam: RF00056,

SNORA71C in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71C Gene

No ASD Table

Relevant External Links for SNORA71C Gene

GeneLoc Exon Structure for
SNORA71C

No data available for mRNA/cDNA for SNORA71C Gene

Expression for SNORA71C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA71C Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA71C

SOURCE GeneReport for Unigene cluster for SNORA71C Gene:

Hs.711516
genes like me logo Genes that share expression patterns with SNORA71C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71C Gene

Orthologs for SNORA71C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71C Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA71 31
  • 99 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA71 31 31
  • 89 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 31
  • 82 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Gm26003 31
  • 79 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA71 31
  • 79 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia SNORA71 31
  • 60 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves SNORA71 31
  • 78 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA71 31
  • 74 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA71 31 31
  • 68 (a)
ManyToMany
Species where no ortholog for SNORA71C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA71C Gene

ENSEMBL:
Gene Tree for SNORA71C (if available)
TreeFam:
Gene Tree for SNORA71C (if available)

Paralogs for SNORA71C Gene

No data available for Paralogs for SNORA71C Gene

Variants for SNORA71C Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORA71C Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORA71C Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354

Additional Variant Information for SNORA71C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA71C

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA71C Gene

Disorders for SNORA71C Gene

Additional Disease Information for SNORA71C

No disorders were found for SNORA71C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71C Gene

Publications for SNORA71C Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA71C Gene

Sources for SNORA71C Gene