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Aliases for SNORA71B Gene
Subcategory (RNA class) for SNORA71B Gene
snoRNA
Number of RNA Genes sources:
3 / 17
Aliases for SNORA71B Gene
External Ids for SNORA71B Gene
- HGNC: 10233
- Entrez Gene: 26776
- Ensembl: ENSG00000235408
Previous HGNC Symbols for SNORA71B Gene
- RNU71B
Previous GeneCards Identifiers for SNORA71B Gene
- GC20M036494
- GC20M036500
- GC20M037054
- GC20M033788
- GC20M037066
- GC20M037074
- GC20M037085
Summaries for SNORA71B Gene
GeneCards Summary for SNORA71B Gene
SNORA71B (Small Nucleolar RNA, H/ACA Box 71B) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORA71B Gene
-
Small nucleolar RNA SNORA71
Additional gene information for SNORA71B Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA71B Gene
Genomics for SNORA71B Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORA71B Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORA71B on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNORA71B gene promoter:
-
- COMP1
- Elk-1
- GATA-1
- GR
- GR-alpha
- GR-beta
- POU3F2
Genomic Locations for SNORA71B Gene
Genomic Locations for SNORA71B Gene
- chr20:38,425,083-38,425,354
- (GRCh38/hg38)
- Size:
- 272 bases
- Orientation:
- Minus strand
- chr20:37,053,843-37,053,979
- (GRCh37/hg19)
- Size:
- 137 bases
- Orientation:
- Minus strand
Genomic View for SNORA71B Gene
Genes around SNORA71B on UCSC Golden Path with GeneCards custom track
SNORA71B in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 20q11.23 by HGNC
- 20q11.23 by Entrez Gene
- 20q11.23 by Ensembl
SNORA71B Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORA71B Gene
Proteins for SNORA71B Gene
Post-translational modifications for SNORA71B Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORA71B
- Origene Custom Protein Services for SNORA71B
No data available for DME Specific Peptides for SNORA71B Gene
Domains & Families for SNORA71B Gene
Gene Families for SNORA71B Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA71B Gene
Function for SNORA71B Gene
Phenotypes From GWAS Catalog for SNORA71B Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNORA71B - Select products 50% OFF >
- * SNORA71B CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SNORA71B
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for SNORA71B - Select products 50% OFF >
- * SNORA71B as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71B Gene
Localization for SNORA71B Gene
| Compartment | Confidence |
|---|---|
| nucleus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA71B Gene
Pathways & Interactions for SNORA71B Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA71B Gene
Transcripts for SNORA71B Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA71B Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000066BEF4_9606 | snoRNA | 134 | 4 |
Ensembl: ENST00000364546 (view in UCSC) , Rfam: RF00056, snoDB: SNODB531, snOPY: Homo_sapiens300485, |
| URS000045555D_9606 | snoRNA | 136 | 3 |
HGNC: 10233, RefSeq: NR_002910, snoDB: SNODB174, |
| URS0000A8E179_9606 | snoRNA | 272 | 2 |
Ensembl: ENST00000439232 (view in UCSC) , snoDB: SNODB1477, |
| URS00006C61E2_9606 | snoRNA | 133 | 1 |
Rfam: RF00056, |
SNORA71B in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SNORA71B Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNORA71B - Select products 50% OFF >
- * SNORA71B CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SNORA71B
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for SNORA71B - Select products 50% OFF >
- * SNORA71B as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for SNORA71B Gene
- GeneLoc Exon Structure for
- SNORA71B
Expression for SNORA71B Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA71B
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71B Gene
Orthologs for SNORA71B Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SNORA71 31 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | SNORA71 31 |
|
OneToMany | |
| Cow (Bos Taurus) |
Mammalia | SNORA71 31 |
|
OneToMany | |
| Mouse (Mus musculus) |
Mammalia | Gm23925 31 |
|
ManyToMany | |
| Gm24411 31 |
|
ManyToMany | |||
| Gm25683 31 |
|
ManyToMany | |||
| Gm22684 31 |
|
ManyToMany | |||
| Gm22797 31 |
|
ManyToMany | |||
| Gm25402 31 |
|
ManyToMany | |||
| Gm24031 31 |
|
ManyToMany | |||
| Gm25187 31 |
|
ManyToMany | |||
| Gm24163 31 |
|
ManyToMany | |||
| Platypus (Ornithorhynchus anatinus) |
Mammalia | SNORA71 31 |
|
OneToMany | |
| Oppossum (Monodelphis domestica) |
Mammalia | SNORA71 31 |
|
OneToMany | |
| Chicken (Gallus gallus) |
Aves | SNORA71 31 |
|
OneToMany | |
| Lizard (Anolis carolinensis) |
Reptilia | SNORA71 31 |
|
ManyToMany | |
| Zebrafish (Danio rerio) |
Actinopterygii | SNORA71 31 31 |
|
ManyToMany |
- Species where no ortholog for SNORA71B was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
Paralogs for SNORA71B Gene
No data available for Paralogs for SNORA71B Gene
Variants for SNORA71B Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2758794 | CNV | gain | 17122850 |
| esv35121 | CNV | gain | 17911159 |
| nsv1058457 | CNV | loss | 25217958 |
| nsv1063495 | CNV | gain | 25217958 |
| nsv509769 | CNV | insertion | 20534489 |
| nsv817893 | CNV | gain | 17921354 |
Additional Variant Information for SNORA71B Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORA71B
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA71B Gene
Disorders for SNORA71B Gene
Additional Disease Information for SNORA71B
No disorders were found for SNORA71B Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71B Gene
Publications for SNORA71B Gene
- The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P … Kiss T (Genes & development 1997) 2 3
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
- Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 3
ExternalLinks
Products for SNORA71B Gene
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- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORA71B
- Origene Custom Protein Services for SNORA71B
- Browse OriGene Inhibitory RNA Products For SNORA71B
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORA71B
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORA71B
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORA71B
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORA71B
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORA71B
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORA71B
Sources for SNORA71B Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB