Aliases for SNORA71B Gene

Subcategory (RNA class) for SNORA71B Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORA71B Gene

  • Small Nucleolar RNA, H/ACA Box 71B 2 3 5
  • SNORA71B 2 5 170
  • RNA, U71B Small Nucleolar 2 3
  • U71b 2 3
  • SNODB1477 177
  • SNODB531 177
  • SNODB174 177
  • RF00056 168
  • RNU71B 3

External Ids for SNORA71B Gene

Previous HGNC Symbols for SNORA71B Gene

  • RNU71B

Previous GeneCards Identifiers for SNORA71B Gene

  • GC20M036494
  • GC20M036500
  • GC20M037054
  • GC20M033788
  • GC20M037066
  • GC20M037074
  • GC20M037085

Summaries for SNORA71B Gene

GeneCards Summary for SNORA71B Gene

SNORA71B (Small Nucleolar RNA, H/ACA Box 71B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA71B Gene

  • Small nucleolar RNA SNORA71

Additional gene information for SNORA71B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA71B Gene

Genomics for SNORA71B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA71B Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA71B on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA71B gene promoter:
  • COMP1
  • Elk-1
  • GATA-1
  • GR
  • GR-alpha
  • GR-beta
  • POU3F2

Genomic Locations for SNORA71B Gene

Genomic Locations for SNORA71B Gene
chr20:38,425,083-38,425,354
(GRCh38/hg38)
Size:
272 bases
Orientation:
Minus strand
chr20:37,053,843-37,053,979
(GRCh37/hg19)
Size:
137 bases
Orientation:
Minus strand

Genomic View for SNORA71B Gene

Genes around SNORA71B on UCSC Golden Path with GeneCards custom track
SNORA71B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA71B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA71B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71B Gene

Proteins for SNORA71B Gene

Post-translational modifications for SNORA71B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71B Gene

Domains & Families for SNORA71B Gene

Gene Families for SNORA71B Gene

genes like me logo Genes that share domains with SNORA71B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA71B Gene

Function for SNORA71B Gene

Phenotypes From GWAS Catalog for SNORA71B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71B Gene

Localization for SNORA71B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA71B gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORA71B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA71B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA71B Gene

Pathways & Interactions for SNORA71B Gene

PathCards logo

SuperPathways for SNORA71B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA71B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA71B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA71B Gene

Drugs & Compounds for SNORA71B Gene

No Compound Related Data Available

Transcripts for SNORA71B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA71B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000066BEF4_9606 snoRNA 134 4

Ensembl: ENST00000364546 (view in UCSC) ,

Rfam: RF00056,

snoDB: SNODB531,

snOPY: Homo_sapiens300485,

URS000045555D_9606 snoRNA 136 3

HGNC: 10233,

RefSeq: NR_002910,

snoDB: SNODB174,

URS0000A8E179_9606 snoRNA 272 2

Ensembl: ENST00000439232 (view in UCSC) ,

snoDB: SNODB1477,

URS00006C61E2_9606 snoRNA 133 1

Rfam: RF00056,

SNORA71B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA71B Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71B Gene

No ASD Table

Relevant External Links for SNORA71B Gene

GeneLoc Exon Structure for
SNORA71B

Expression for SNORA71B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA71B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA71B

genes like me logo Genes that share expression patterns with SNORA71B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71B Gene

Orthologs for SNORA71B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA71 31
  • 97 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA71 31
  • 89 (a)
OneToMany
Cow
(Bos Taurus)
Mammalia SNORA71 31
  • 88 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Gm23925 31
  • 84 (a)
ManyToMany
Gm24411 31
  • 84 (a)
ManyToMany
Gm25683 31
  • 81 (a)
ManyToMany
Gm22684 31
  • 79 (a)
ManyToMany
Gm22797 31
  • 77 (a)
ManyToMany
Gm25402 31
  • 76 (a)
ManyToMany
Gm24031 31
  • 76 (a)
ManyToMany
Gm25187 31
  • 74 (a)
ManyToMany
Gm24163 31
  • 70 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 31
  • 81 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA71 31
  • 78 (a)
OneToMany
Chicken
(Gallus gallus)
Aves SNORA71 31
  • 80 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA71 31
  • 71 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA71 31 31
  • 70 (a)
ManyToMany
Species where no ortholog for SNORA71B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA71B Gene

ENSEMBL:
Gene Tree for SNORA71B (if available)
TreeFam:
Gene Tree for SNORA71B (if available)

Paralogs for SNORA71B Gene

No data available for Paralogs for SNORA71B Gene

Variants for SNORA71B Gene

Additional dbSNP identifiers (rs#s) for SNORA71B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA71B Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354

Additional Variant Information for SNORA71B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA71B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA71B Gene

Disorders for SNORA71B Gene

Additional Disease Information for SNORA71B

No disorders were found for SNORA71B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71B Gene

Publications for SNORA71B Gene

  1. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P … Kiss T (Genes & development 1997) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 3

Products for SNORA71B Gene

Sources for SNORA71B Gene