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Aliases for SNORA71B Gene

Subcategory (RNA class) for SNORA71B Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SNORA71B Gene

  • Small Nucleolar RNA, H/ACA Box 71B 2 3 5
  • RNA, U71B Small Nucleolar 2 3
  • RNU71B 3
  • U71b 3

External Ids for SNORA71B Gene

Previous HGNC Symbols for SNORA71B Gene

  • RNU71B

Previous GeneCards Identifiers for SNORA71B Gene

  • GC20M036494
  • GC20M036500
  • GC20M037054
  • GC20M033788
  • GC20M037066
  • GC20M037074
  • GC20M037085

Summaries for SNORA71B Gene

GeneCards Summary for SNORA71B Gene

SNORA71B (Small Nucleolar RNA, H/ACA Box 71B) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNORA71B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA71B Gene

Genomics for SNORA71B Gene

GeneHancer (GH) Regulatory Elements for SNORA71B Gene

Promoters and enhancers for SNORA71B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J038425 Enhancer 0.9 Ensembl ENCODE 600.7 -1.6 -1599 2.6 POLR2A ZSCAN21 SP7 PRDM1 GLIS2 ZNF600 ZIC2 ZSCAN4 ZNF639 ZNF629 GC20M038428 GC20M038431 GC20M038432 GC20M038434 SNORA71A SNORA71B SNHG17
GH20J038139 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.8 +269.4 269364 33.6 ZNF652 ZFX CC2D1A ELF3 CTCF ZKSCAN8 MNT CBFA2T2 ZNF148 POLR2A TGM2 RALGAPB ACTR5 RN7SKP173 SNHG17 TTI1 SNORA71A SNORA71C DHX35 RPN2
GH20J038471 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.4 -47.7 -47744 3.4 SP1 ZFX CTCF ELF3 MNT NKRF POLR2A CEBPG RERE GTF2F1 RALGAPB SNHG17 ENSG00000224635 SNORA60 SNHG11 ENSG00000201811 SNORA71D SNORA71C SNORA71A SNORA71B
GH20J038722 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE 9.6 -292.8 -292760 17 SP1 CTCF CBFA2T2 ZNF148 SP7 KLF14 RAD21 KAT8 GLIS2 HMG20B SLC32A1 SNHG17 RALGAPB SNORA71C FAM83D DHX35 RN7SKP173 SNORA71A SNORA71B ENSG00000224635
GH20J038220 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 10.2 +204.2 204164 0.8 ELF3 CTCF AHR RAD21 ARID2 ZNF600 ZNF143 REST TRIM22 PATZ1 RPRD1B TTI1 ENSG00000224635 SNORA71A SNORA71B KIAA1755 ENSG00000277829 TGM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA71B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA71B gene promoter:
  • COMP1
  • Elk-1
  • GATA-1
  • GR
  • GR-alpha
  • GR-beta
  • POU3F2

Genomic Locations for SNORA71B Gene

Genomic Locations for SNORA71B Gene
chr20:38,425,083-38,425,354
(GRCh38/hg38)
Size:
272 bases
Orientation:
Minus strand
chr20:37,053,843-37,053,979
(GRCh37/hg19)
Size:
137 bases
Orientation:
Minus strand

Genomic View for SNORA71B Gene

Genes around SNORA71B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA71B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA71B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71B Gene

Proteins for SNORA71B Gene

Post-translational modifications for SNORA71B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71B Gene

Domains & Families for SNORA71B Gene

Gene Families for SNORA71B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA71B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA71B Gene

Function for SNORA71B Gene

Phenotypes From GWAS Catalog for SNORA71B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71B Gene

Localization for SNORA71B Gene

Gene Ontology (GO) - Cellular Components for SNORA71B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA71B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA71B Gene

Pathways & Interactions for SNORA71B Gene

PathCards logo

SuperPathways for SNORA71B Gene

No Data Available

Interacting Proteins for SNORA71B Gene

Gene Ontology (GO) - Biological Process for SNORA71B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA71B: view

No data available for Pathways by source and SIGNOR curated interactions for SNORA71B Gene

Drugs & Compounds for SNORA71B Gene

No Compound Related Data Available

Transcripts for SNORA71B Gene

mRNA/cDNA for SNORA71B Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71B Gene

No ASD Table

Relevant External Links for SNORA71B Gene

GeneLoc Exon Structure for
SNORA71B
ECgene alternative splicing isoforms for
SNORA71B

Expression for SNORA71B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA71B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA71B Gene:

SNORA71B
genes like me logo Genes that share expression patterns with SNORA71B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71B Gene

Orthologs for SNORA71B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA71 35
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA71 35
  • 89 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA71 35
  • 88 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23925 35
  • 84 (a)
ManyToMany
Gm24411 35
  • 84 (a)
ManyToMany
Gm25683 35
  • 81 (a)
ManyToMany
Gm22684 35
  • 79 (a)
ManyToMany
Gm22797 35
  • 77 (a)
ManyToMany
Gm25402 35
  • 76 (a)
ManyToMany
Gm24031 35
  • 76 (a)
ManyToMany
Gm25187 35
  • 74 (a)
ManyToMany
Gm24163 35
  • 70 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 35
  • 81 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA71 35
  • 78 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA71 35
  • 80 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA71 35
  • 71 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA71 35 35
  • 71 (a)
ManyToMany
Species where no ortholog for SNORA71B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA71B Gene

ENSEMBL:
Gene Tree for SNORA71B (if available)
TreeFam:
Gene Tree for SNORA71B (if available)

Paralogs for SNORA71B Gene

No data available for Paralogs for SNORA71B Gene

Variants for SNORA71B Gene

Sequence variations from dbSNP and Humsavar for SNORA71B Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1001066578 -- 38,427,223(-) A/C upstream_transcript_variant
rs1002695195 -- 38,427,103(-) A/C upstream_transcript_variant
rs1003276139 -- 38,425,354(-) T/A/C upstream_transcript_variant
rs1003652850 -- 38,425,100(-) C/T downstream_transcript_variant
rs1004286384 -- 38,426,300(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA71B Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354

Additional Variant Information for SNORA71B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA71B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA71B Gene

Disorders for SNORA71B Gene

Additional Disease Information for SNORA71B

No disorders were found for SNORA71B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71B Gene

Publications for SNORA71B Gene

  1. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P … Kiss T (Genes & development 1997) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 3 58

Products for SNORA71B Gene

Sources for SNORA71B Gene

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