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SNORA71A Gene(RNA Gene)

Small Nucleolar RNA, H/ACA Box 71A

GCID:
GC20M038427
GIFtS:
17
Genes Participants
UDN Logo

Aliases for SNORA71A Gene

Subcategory (RNA class) for SNORA71A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA71A Gene

  • Small Nucleolar RNA, H/ACA Box 71A 2 3 5
  • RNA, U71A Small Nucleolar 2 3
  • RNU71A 3
  • U71a 3

External Ids for SNORA71A Gene

ORGUL Members for SNORA71A Gene

Previous HGNC Symbols for SNORA71A Gene

  • RNU71A

Previous GeneCards Identifiers for SNORA71A Gene

  • GC20M036498
  • GC20M036502
  • GC20M037056
  • GC20M033790
  • GC20M037059
  • GC20M037067
  • GC20M037075
  • GC20M037087

Summaries for SNORA71A Gene

GeneCards Summary for SNORA71A Gene

SNORA71A (Small Nucleolar RNA, H/ACA Box 71A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA71A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA71A Gene

Genomics for SNORA71A Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORA71A Gene

Promoters and enhancers for SNORA71A Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20I038425 Enhancer 0.7 ENCODE 550.8 +0.5 490 2.6 ZSCAN4 INSM2 ZIC2 ZEB1 FOSL1 POLR2B GLIS2 POLR2A FOSL2 ZNF391 GC20M038428 GC20M038436 SNORA71A SNORA71B GC20M038435 GC20M038432 SNHG17
GH20I038428 Enhancer 0.5 ENCODE 550.8 -1.5 -1450 0.2 ZNF121 MAFF ZNF316 POLR2A MAFG MAFK EMSY GC20M038430 GC20M038431 GC20M038432 GC20M038435 SNORA71A SNORA71C GC20M038436 ENSG00000224635 SNHG17
GH20I038139 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 42.5 +271.5 271453 33.6 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF143 MCM3 SP3 NFYC TGM2 SNHG17 RALGAPB ACTR5 RN7SKP173 SNORA71A TTI1 SNORA71C RPN2 DHX35
GH20I038031 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 32.6 +393.8 393761 3.5 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 TTI1 RPRD1B SNHG17 SNORA71A ACTR5 RALGAPB SNORA71C RN7SKP173 RPN2 RPS3P2
GH20I038433 Promoter/Enhancer 1.6 Ensembl ENCODE 42.2 -7.4 -7375 2.9 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 SNHG17 GC20M038434 SNORA71D GC20M038437 ACTR5 RALGAPB ENSG00000224635 TTI1 SNORA71A SNORA71C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA71A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA71A gene promoter:

Genomic Locations for SNORA71A Gene

Genomic Locations for SNORA71A Gene
chr20:38,427,306-38,427,443
(GRCh38/hg38)
Size:
138 bases
Orientation:
Minus strand
chr20:37,055,949-37,056,086
(GRCh37/hg19)

Genomic View for SNORA71A Gene

Genes around SNORA71A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA71A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA71A Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORA71A Gene

Proteins for SNORA71A Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORA71A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71A Gene

Domains & Families for SNORA71A Gene

Gene Families for SNORA71A Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA71A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA71A Gene

Function for SNORA71A Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORA71A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71A Gene

Localization for SNORA71A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA71A Gene

Pathways & Interactions for SNORA71A Gene

SuperPathways for SNORA71A Gene

PathCards logo More details on SuperPathways for SNORA71A
No Data Available

Interacting Proteins for SNORA71A Gene

Gene Ontology (GO) - Biological Process for SNORA71A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA71A Gene

Drugs & Compounds for SNORA71A Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORA71A Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORA71A Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA71A Gene

Small nucleolar RNA, H/ACA box 71A:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71A Gene

No ASD Table

Relevant External Links for SNORA71A Gene

GeneLoc Exon Structure for
SNORA71A
ECgene alternative splicing isoforms for
SNORA71A

Expression for SNORA71A Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA71A Gene

mRNA expression in normal human tissues for SNORA71A Gene
mRNA expression by GTEx for SNORA71A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA71A Gene:

SNORA71A

SOURCE GeneReport for Unigene cluster for SNORA71A Gene:

Hs.681779
genes like me logo Genes that share expression patterns with SNORA71A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71A Gene

Orthologs for SNORA71A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORA71 34
  • 98 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORA71 34
  • 82 (a)
 ManyToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORA71 34
  • 81 (a)
 OneToMany
oppossum
(Monodelphis domestica)
 Mammalia SNORA71 34
  • 78 (a)
 OneToMany
mouse
(Mus musculus)
 Mammalia Gm24258 34
  • 65 (a)
 ManyToMany
dog
(Canis familiaris)
 Mammalia SNORA71 34
  • 62 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves SNORA71 34
  • 76 (a)
 OneToMany
lizard
(Anolis carolinensis)
 Reptilia SNORA71 34
  • 72 (a)
 OneToMany
zebrafish
(Danio rerio)
 Actinopterygii SNORA71 34 34
  • 72 (a)
 ManyToMany
Species where no ortholog for SNORA71A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA71A Gene

ENSEMBL:
Gene Tree for SNORA71A (if available)
TreeFam:
Gene Tree for SNORA71A (if available)

Paralogs for SNORA71A Gene

No data available for Paralogs for SNORA71A Gene

Variants for SNORA71A Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORA71A Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1001066578 -- 38,427,223(-) A/C downstream_transcript_variant
rs1002695195 -- 38,427,103(-) A/C downstream_transcript_variant
rs1003519963 -- 38,429,122(-) G/A upstream_transcript_variant
rs1004636195 -- 38,428,218(-) G/A upstream_transcript_variant
rs1005020543 -- 38,428,453(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA71A Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
esv6859 CNV loss 19470904
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354
nsv9809 CNV loss 18304495

Additional Variant Information for SNORA71A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA71A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA71A Gene

Disorders for SNORA71A Gene

Additional Disease Information for SNORA71A

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORA71A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71A Gene

Publications for SNORA71A Gene

  1. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P … Kiss T (Genes & development 1997) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 3 58

Products for SNORA71A Gene

Sources for SNORA71A Gene

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