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Aliases for SNORA71A Gene
Data sources for SNORA71A Gene:
Subcategory (RNA class) for SNORA71A Gene
snoRNA
Aliases for SNORA71A Gene
- Small Nucleolar RNA, H/ACA Box 71A (HGNC, NCBI Entrez Gene, Ensembl)
- RNA, U71A Small Nucleolar (HGNC, NCBI Entrez Gene)
- SNORA71A (Ensembl, snOPY)
- U71a (HGNC, NCBI Entrez Gene)
- SNODB1035 (snoDB)
- RF00056 (Rfam)
- SNODB95 (snoDB)
- RNU71A (NCBI Entrez Gene)
External Ids for SNORA71A Gene
- HGNC: 10232
- NCBI Entrez Gene: 26777
- Ensembl: ENSG00000225091
Previous HGNC Symbols for SNORA71A Gene
- RNU71A
Previous GeneCards Identifiers for SNORA71A Gene
- GC20M036498
- GC20M036502
- GC20M037056
- GC20M033790
- GC20M037059
- GC20M037067
- GC20M037075
- GC20M037087
Summaries for SNORA71A Gene
GeneCards Summary for SNORA71A Gene
SNORA71A (Small Nucleolar RNA, H/ACA Box 71A) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORA71A Gene
-
Small nucleolar RNA SNORA71
Additional gene information for SNORA71A Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA71A Gene
Genomics for SNORA71A Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORA71A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORA71A on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNORA71A gene promoter:
-
- COMP1
- Elk-1
- GATA-1
- GR
- GR-alpha
- GR-beta
- POU3F2
- YY1
Genomic Locations for SNORA71A Gene
Latest Assembly
- chr20:38,427,306-38,427,443
- (GRCh38/hg38)
- Size:
- 138 bases
- Orientation:
- Minus strand
Previous Assembly
- chr20:37,055,949-37,056,086
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 138 bases
- Orientation:
- Minus strand
- chr20:37,055,952-37,056,085
- (GRCh37/hg19 by Ensembl)
- Size:
- 134 bases
- Orientation:
- Minus strand
Genomic View for SNORA71A Gene
Genes around SNORA71A on UCSC Golden Path with GeneCards custom track
SNORA71A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 20q11.23 by HGNC
- 20q11.23 by Entrez Gene
- 20q11.23 by Ensembl
SNORA71A Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORA71A Gene
Proteins for SNORA71A Gene
Post-translational modifications for SNORA71A Gene
No Post-translational modifications
No data available for DME Specific Peptides for SNORA71A Gene
Domains & Families for SNORA71A Gene
Gene Families for SNORA71A Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA71A Gene
Function for SNORA71A Gene
Phenotypes From GWAS Catalog for SNORA71A Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORA71A - Starting at $85 >
- * SNORA71A CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SNORA71A - Starting at $45 >
- * SNORA71A as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71A Gene
Localization for SNORA71A Gene
| Compartment | Confidence |
|---|---|
| cytoskeleton | 1 |
| nucleus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA71A Gene
Pathways & Interactions for SNORA71A Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA71A Gene
Transcripts for SNORA71A Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA71A Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00002B3FE4_9606 | snoRNA | 138 | 4 |
RefSeq: NR_002911, snoDB: SNODB95, snOPY: Homo_sapiens300486, ENA: Y11165.1:1..138:ncRNA, |
| URS00006EC784_9606 | snoRNA | 134 | 3 |
Ensembl: ENST00000364729 (view in UCSC) , Rfam: RF00056, snoDB: SNODB1035, |
| URS0001BC320D_9606 | snoRNA | 134 | 1 |
Rfam: RF00056, |
SNORA71A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SNORA71A Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORA71A - Starting at $85 >
- * SNORA71A CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SNORA71A - Starting at $45 >
- * SNORA71A as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Relevant External Links for SNORA71A Gene
- GeneLoc Exon Structure for
- SNORA71A
Expression for SNORA71A Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA71A
SOURCE GeneReport for Unigene cluster for SNORA71A Gene:
Hs.681779Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71A Gene
Orthologs for SNORA71A Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SNORA71 31 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | SNORA71 31 |
|
ManyToMany | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | SNORA71 31 |
|
OneToMany | |
| Oppossum (Monodelphis domestica) |
Mammalia | SNORA71 31 |
|
OneToMany | |
| Mouse (Mus musculus) |
Mammalia | Gm24258 31 |
|
ManyToMany | |
| Dog (Canis familiaris) |
Mammalia | SNORA71 31 |
|
OneToOne | |
| Chicken (Gallus gallus) |
Aves | SNORA71 31 |
|
OneToMany | |
| Lizard (Anolis carolinensis) |
Reptilia | SNORA71 31 |
|
OneToMany | |
| Zebrafish (Danio rerio) |
Actinopterygii | SNORA71 31 31 |
|
ManyToMany |
- Species where no ortholog for SNORA71A was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
Paralogs for SNORA71A Gene
No data available for Paralogs for SNORA71A Gene
Variants for SNORA71A Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for SNORA71A Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORA71A
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA71A Gene
Disorders for SNORA71A Gene
Additional Disease Information for SNORA71A
No disorders were found for SNORA71A Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71A Gene
Publications for SNORA71A Gene
- The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P … Kiss T (Genes & development 1997) 2 3
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
- Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 3
ExternalLinks
Products for SNORA71A Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORA71A
- Origene Custom Protein Services for SNORA71A
- Browse OriGene Inhibitory RNA Products For SNORA71A
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORA71A
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORA71A
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORA71A
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORA71A
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORA71A
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORA71A
Sources for SNORA71A Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB