Aliases for SNORA71A Gene

Data sources for SNORA71A Gene:

Subcategory (RNA class) for SNORA71A Gene

snoRNA

Aliases for SNORA71A Gene

External Ids for SNORA71A Gene

Previous HGNC Symbols for SNORA71A Gene

  • RNU71A

Previous GeneCards Identifiers for SNORA71A Gene

  • GC20M036498
  • GC20M036502
  • GC20M037056
  • GC20M033790
  • GC20M037059
  • GC20M037067
  • GC20M037075
  • GC20M037087

Summaries for SNORA71A Gene

GeneCards Summary for SNORA71A Gene

SNORA71A (Small Nucleolar RNA, H/ACA Box 71A) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA71A Gene

  • Small nucleolar RNA SNORA71

Additional gene information for SNORA71A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA71A Gene

Genomics for SNORA71A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA71A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J038425 Enhancer 0.9 Ensembl ENCODE 250.7 +0.4 426 2.8 POLR2A ZEB1 ZIC2 ZNF639 RBM22 JUND FOSL1 USF2 SUPT5H MAFK HSALNG0129983 SNORA71A SNORA71B Y11166 SNHG17 RALGAPB LBP
GH20J038428 Enhancer 0.5 ENCODE 250.7 -1.5 -1450 0.2 MAFF ZNF316 MAFK MAFG ZNF121 EMSY SNORA71A SNORA71C ENSG00000224635 SNHG17 RALGAPB LBP
GH20J038139 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 31.4 +271.5 271453 33.6 ZSCAN16 TBP MXD4 CEBPA MNT DEK IKZF1 HES1 ZFP64 MBD2 TGM2 RALGAPB ACTR5 RN7SKP173 SNHG17 TTI1 SNORA71A SNORA71C DHX35 RPN2
GH20J038431 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas 22.9 -6.6 -6597 4.5 ZSCAN16 CHD2 TBP ZBTB10 BCL11A SP1 MXD4 CEBPA SIX5 NR2C1 SNHG17 HSALNG0129984 SNORA71D RALGAPB ACTR5 ENSG00000224635 TTI1 SNORA71C RN7SKP173 SNORA71A
GH20J038031 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 13.3 +393.7 393683 3.7 CHD2 TBP SP1 MXD4 SIX5 NR2C1 MNT DEK IKZF1 BRCA1 TTI1 RPRD1B SNHG17 ACTR5 RALGAPB VSTM2L SNORA71C SNORA71A RN7SKP173 RBL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA71A on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA71A gene promoter:
  • COMP1
  • Elk-1
  • GATA-1
  • GR
  • GR-alpha
  • GR-beta
  • POU3F2
  • YY1

Genomic Locations for SNORA71A Gene

Latest Assembly
chr20:38,427,306-38,427,443
(GRCh38/hg38)
Size:
138 bases
Orientation:
Minus strand

Previous Assembly
chr20:37,055,949-37,056,086
(GRCh37/hg19 by Entrez Gene)
Size:
138 bases
Orientation:
Minus strand

chr20:37,055,952-37,056,085
(GRCh37/hg19 by Ensembl)
Size:
134 bases
Orientation:
Minus strand

Genomic View for SNORA71A Gene

Genes around SNORA71A on UCSC Golden Path with GeneCards custom track
SNORA71A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORA71A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA71A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71A Gene

Proteins for SNORA71A Gene

Post-translational modifications for SNORA71A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71A Gene

Domains & Families for SNORA71A Gene

Gene Families for SNORA71A Gene

genes like me logo Genes that share domains with SNORA71A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA71A Gene

Function for SNORA71A Gene

Phenotypes From GWAS Catalog for SNORA71A Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71A Gene

Localization for SNORA71A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA71A gene
Compartment Confidence
cytoskeleton 1
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORA71A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA71A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA71A Gene

Pathways & Interactions for SNORA71A Gene

PathCards logo

SuperPathways for SNORA71A Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA71A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA71A: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA71A Gene

Drugs & Compounds for SNORA71A Gene

No Compound Related Data Available

Transcripts for SNORA71A Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA71A Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002B3FE4_9606 snoRNA 138 4

RefSeq: NR_002911,

snoDB: SNODB95,

snOPY: Homo_sapiens300486,

ENA: Y11165.1:1..138:ncRNA,

URS00006EC784_9606 snoRNA 134 3

Ensembl: ENST00000364729 (view in UCSC) ,

Rfam: RF00056,

snoDB: SNODB1035,

URS0001BC320D_9606 snoRNA 134 1

Rfam: RF00056,

SNORA71A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA71A Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71A Gene

No ASD Table

Relevant External Links for SNORA71A Gene

GeneLoc Exon Structure for
SNORA71A

Expression for SNORA71A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA71A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA71A

SOURCE GeneReport for Unigene cluster for SNORA71A Gene:

Hs.681779
genes like me logo Genes that share expression patterns with SNORA71A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71A Gene

Orthologs for SNORA71A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71A Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA71 31
  • 98 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA71 31
  • 82 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 31
  • 81 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA71 31
  • 78 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Gm24258 31
  • 65 (a)
ManyToMany
Dog
(Canis familiaris)
Mammalia SNORA71 31
  • 62 (a)
OneToOne
Chicken
(Gallus gallus)
Aves SNORA71 31
  • 76 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA71 31
  • 72 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA71 31 31
  • 72 (a)
ManyToMany
Species where no ortholog for SNORA71A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA71A Gene

ENSEMBL:
Gene Tree for SNORA71A (if available)
TreeFam:
Gene Tree for SNORA71A (if available)

Paralogs for SNORA71A Gene

No data available for Paralogs for SNORA71A Gene

Variants for SNORA71A Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORA71A Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORA71A Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
esv6859 CNV loss 19470904
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354
nsv9809 CNV loss 18304495

Additional Variant Information for SNORA71A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA71A

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA71A Gene

Disorders for SNORA71A Gene

Additional Disease Information for SNORA71A

No disorders were found for SNORA71A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71A Gene

Publications for SNORA71A Gene

  1. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P … Kiss T (Genes & development 1997) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 3

Products for SNORA71A Gene

Sources for SNORA71A Gene