Aliases for SNORA70J Gene

Subcategory (RNA class) for SNORA70J Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for SNORA70J Gene

  • Small Nucleolar RNA, H/ACA Box 70J 2 3 5
  • SNORA70L1 176
  • SNORA70J 2
  • RF00156 174

External Ids for SNORA70J Gene

Previous GeneCards Identifiers for SNORA70J Gene

  • GC05P171390
  • GC05P171393
  • GC00U936763
  • GC05U902872
  • GC05P171378
  • GC05P171381
  • GC05P171384
  • GC05P171388

Summaries for SNORA70J Gene

GeneCards Summary for SNORA70J Gene

SNORA70J (Small Nucleolar RNA, H/ACA Box 70J) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA70J Gene

  • Small nucleolar RNA SNORA70

Additional gene information for SNORA70J Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA70J Gene

Genomics for SNORA70J Gene

GeneHancer (GH) Regulatory Elements for SNORA70J Gene

Promoters and enhancers for SNORA70J Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J171366 Enhancer 0.3 Ensembl 750.6 +1.5 1498 1.6 ZNF384 RUNX3 RPL10P8 SNORA70J piR-60246-135 RPSAP71 lnc-NPM1-1 RF00017-5091
GH05J171336 Promoter/Enhancer 0.9 FANTOM5 CraniofacialAtlas 11.9 -29.2 -29221 0.2 CTCF NRF1 CTBP1 EZH2 ZNF217 ZNF335 RAD21 SMARCE1 SNORA70J RPL10P8 RPSAP71 ENSG00000213393 lnc-FBXW11-9 lnc-TLX3-1 RF00017-5091
GH05J171271 Enhancer 0.7 Ensembl ENCODE 10.7 -94.7 -94717 1.2 MAFK CEBPG POLR2A CEBPB ZNF316 EP300 ZNF580 JUND ZNF146 MAFF TLX3 RPL10P8 RPSAP71 SNORA70J ENSG00000253966 RF01210-320 ENSG00000253213 lnc-TLX3-2 RF00017-5091 RANBP17
GH05J171342 Enhancer 0.5 Ensembl 12.4 -23.4 -23417 0.2 CTCF RAD21 PKNOX1 REST SMARCA5 SMC3 ZNF143 ZNF2 SNORA70J RPL10P8 RPSAP71 TLX3 FGF18 ENSG00000213393 lnc-FBXW11-9 lnc-TLX3-1 RF00017-5091
GH05J171337 Enhancer 0.5 ENCODE 11.9 -29.0 -29016 0 CTCF RAD21 REST NRF1 EZH2 SMC3 ZNF335 SNORA70J RPL10P8 RPSAP71 ENSG00000213393 lnc-FBXW11-9 lnc-TLX3-1 RF00017-5091
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA70J on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA70J Gene

Genomic Locations for SNORA70J Gene
chr5:171,366,118-171,366,252
(GRCh38/hg38)
Size:
135 bases
Orientation:
Plus strand
chr5:170,793,122-170,793,256
(GRCh37/hg19)
Size:
135 bases
Orientation:
Plus strand

Genomic View for SNORA70J Gene

Genes around SNORA70J on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA70J Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA70J Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA70J Gene

Proteins for SNORA70J Gene

Post-translational modifications for SNORA70J Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA70J Gene

Domains & Families for SNORA70J Gene

Gene Families for SNORA70J Gene

genes like me logo Genes that share domains with SNORA70J: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA70J Gene

Function for SNORA70J Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA70J Gene

Localization for SNORA70J Gene

Gene Ontology (GO) - Cellular Components for SNORA70J Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA70J: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA70J Gene

Pathways & Interactions for SNORA70J Gene

PathCards logo

SuperPathways for SNORA70J Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA70J Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA70J: view

No data available for Pathways by source and SIGNOR curated interactions for SNORA70J Gene

Drugs & Compounds for SNORA70J Gene

No Compound Related Data Available

Transcripts for SNORA70J Gene

mRNA/cDNA for SNORA70J Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA70J Gene

No ASD Table

Relevant External Links for SNORA70J Gene

GeneLoc Exon Structure for
SNORA70J
ECgene alternative splicing isoforms for
SNORA70J

Expression for SNORA70J Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA70J Gene

Orthologs for SNORA70J Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA70J Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA70 33
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA70 33
  • 76 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA70 33
  • 70 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm24236 33
  • 67 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA70 33
  • 62 (a)
ManyToMany
Species where no ortholog for SNORA70J was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA70J Gene

ENSEMBL:
Gene Tree for SNORA70J (if available)
TreeFam:
Gene Tree for SNORA70J (if available)

Paralogs for SNORA70J Gene

No data available for Paralogs for SNORA70J Gene

Variants for SNORA70J Gene

Sequence variations from dbSNP and Humsavar for SNORA70J Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000221058 -- 171,366,600(+) G/A/C downstream_transcript_variant
rs1003371753 -- 171,365,060(+) G/A upstream_transcript_variant
rs1004210084 -- 171,365,759(+) G/A upstream_transcript_variant
rs10044955 -- 171,366,662(+) C/A downstream_transcript_variant
rs10044965 -- 171,366,576(+) G/A downstream_transcript_variant

Additional Variant Information for SNORA70J Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA70J

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA70J Gene

Disorders for SNORA70J Gene

Additional Disease Information for SNORA70J

No disorders were found for SNORA70J Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA70J Gene

Publications for SNORA70J Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 56

No data available for External Links for SNORA70J Gene

Products for SNORA70J Gene

Sources for SNORA70J Gene