Aliases for SNORA70F Gene

Subcategory (RNA class) for SNORA70F Gene

snoRNA

Number of RNA Genes sources:

2 / 14

Aliases for SNORA70F Gene

  • Small Nucleolar RNA, H/ACA Box 70F 2 3 5
  • Small Nucleolar RNA, H/ACA Box 70F (Retrotransposed) 2 3
  • SNORA70F 2 174
  • RF00156 172
  • U70F 3

External Ids for SNORA70F Gene

Previous GeneCards Identifiers for SNORA70F Gene

  • GC00U922688
  • GC02U901714
  • GC02M165545
  • GC02M157426

Summaries for SNORA70F Gene

GeneCards Summary for SNORA70F Gene

SNORA70F (Small Nucleolar RNA, H/ACA Box 70F) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA70F Gene

  • Small nucleolar RNA SNORA70

Additional gene information for SNORA70F Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA70F Gene

Genomics for SNORA70F Gene

GeneHancer (GH) Regulatory Elements for SNORA70F Gene

Promoters and enhancers for SNORA70F Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J164709 Enhancer 0.9 ENCODE 12 -23.4 -23412 2.8 EP300 FOXK2 TCF12 POLR2G NCOR1 KDM6A TCF7 TEAD1 ZKSCAN8 FOXA2 ENSG00000224331 SNORA70F COBLL1 SLC38A11 lnc-GRB14-2 lnc-COBLL1-1 lnc-SLC38A11-4
GH02J164661 Enhancer 0.9 Ensembl ENCODE 11.5 +26.3 26257 0.2 ZNF217 TCF12 CUX1 EP300 CTBP1 FOXA2 FOS CEBPG CEBPB ZBTB33 piR-32651-006 ENSG00000224331 SNORA70F GRB14 lnc-SCN2A-8 lnc-COBLL1-1 COBLL1
GH02J164837 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 4.6 -153.4 -153405 6.8 FOXK2 ZNF217 EP300 CTCF POLR2G PHF8 TEAD4 ZFX ZBTB10 POLR2A COBLL1 ENSG00000236283 LOC101929633 lnc-SLC38A11-4 ENSG00000232411 SLC38A11 SNORA70F
GH02J164722 Promoter/Enhancer 0.8 Ensembl ENCODE dbSUPER 11.3 -35.1 -35129 1 RBM22 lnc-GRB14-2 SNORA70F ENSG00000224331 COBLL1 RF00012-023 lnc-SLC38A11-4
GH02J164714 Enhancer 0.6 Ensembl dbSUPER 11.5 -26.8 -26824 0.4 ZBTB26 RBM22 RXRA CREB1 SP1 ENSG00000224331 SNORA70F lnc-GRB14-2 lnc-COBLL1-1 lnc-SLC38A11-4 COBLL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA70F on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA70F Gene

Genomic Locations for SNORA70F Gene
chr2:164,687,643-164,687,777
(GRCh38/hg38)
Size:
135 bases
Orientation:
Minus strand
chr2:165,544,153-165,544,287
(GRCh37/hg19)
Size:
135 bases
Orientation:
Minus strand

Genomic View for SNORA70F Gene

Genes around SNORA70F on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA70F Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA70F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA70F Gene

Proteins for SNORA70F Gene

Post-translational modifications for SNORA70F Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA70F Gene

Domains & Families for SNORA70F Gene

Gene Families for SNORA70F Gene

genes like me logo Genes that share domains with SNORA70F: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA70F Gene

Function for SNORA70F Gene

Phenotypes From GWAS Catalog for SNORA70F Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA70F Gene

Localization for SNORA70F Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA70F Gene

Pathways & Interactions for SNORA70F Gene

PathCards logo

SuperPathways for SNORA70F Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORA70F Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA70F Gene

Drugs & Compounds for SNORA70F Gene

No Compound Related Data Available

Transcripts for SNORA70F Gene

mRNA/cDNA for SNORA70F Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA70F Gene

No ASD Table

Relevant External Links for SNORA70F Gene

GeneLoc Exon Structure for
SNORA70F

Expression for SNORA70F Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA70F Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA70F

SOURCE GeneReport for Unigene cluster for SNORA70F Gene:

Hs.664357
genes like me logo Genes that share expression patterns with SNORA70F: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA70F Gene

Orthologs for SNORA70F Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA70F Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA70 31
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA70 31
  • 70 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA70 31
  • 69 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23233 31
  • 66 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA70 31
  • 57 (a)
ManyToMany
Species where no ortholog for SNORA70F was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA70F Gene

ENSEMBL:
Gene Tree for SNORA70F (if available)
TreeFam:
Gene Tree for SNORA70F (if available)

Paralogs for SNORA70F Gene

No data available for Paralogs for SNORA70F Gene

Variants for SNORA70F Gene

Additional dbSNP identifiers (rs#s) for SNORA70F Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA70F Gene

Variant ID Type Subtype PubMed ID
nsv1003734 CNV gain 25217958
nsv517875 CNV loss 19592680
nsv583555 CNV gain 21841781
nsv961523 CNV duplication 23825009

Additional Variant Information for SNORA70F Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA70F

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA70F Gene

Disorders for SNORA70F Gene

Additional Disease Information for SNORA70F

No disorders were found for SNORA70F Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA70F Gene

Publications for SNORA70F Gene

  1. Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits. (PMID: 23754948) Randall JC … Heid IM (PLoS genetics 2013) 3 54
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORA70F Gene

Sources for SNORA70F Gene