Aliases for SNORA70D Gene

Subcategory (RNA class) for SNORA70D Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORA70D Gene

  • Small Nucleolar RNA, H/ACA Box 70D 2 3 5
  • SNORA70D 2 5 170
  • Small Nucleolar RNA, H/ACA Box 70D (Retrotransposed) 2 3
  • U70D 2 3
  • SNODB187 177
  • RF00156 168

External Ids for SNORA70D Gene

Previous GeneCards Identifiers for SNORA70D Gene

  • GC00U922445
  • GC16U901183
  • GC16M071733
  • GC16M057500
  • GC16M071736

Summaries for SNORA70D Gene

GeneCards Summary for SNORA70D Gene

SNORA70D (Small Nucleolar RNA, H/ACA Box 70D) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA70D Gene

  • Small nucleolar RNA SNORA70

Additional gene information for SNORA70D Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA70D Gene

Genomics for SNORA70D Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA70D Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J071700 Enhancer 0.2 FANTOM5 600.7 -1.7 -1742 0.1 SNORA70D PHLPP2 ENSG00000261513 MARVELD3
GH16J071625 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 10.6 +71.2 71245 3.7 GATAD2A PRDM10 FOXA1 PRDM1 ZIC2 RBFOX2 RXRB PATZ1 POLR2A EZH2 MARVELD3 ENSG00000260593 lnc-MARVELD3-5 PHLPP2 RNU6-208P TAT SNORA70D HPR RF00017-2137
GH16J071669 Enhancer 0.8 ENCODE 11 +28.2 28178 2 GATAD2A ATF7 SOX13 SP1 GABPA ETS1 TCF7 FOXA2 KAT7 CREB1 PHLPP2 DHX38 ATXN1L SNORA70D TAT HPR RF00026-410 RNU6-208P HG983740 MARVELD3
GH16J071636 Enhancer 0.8 Ensembl ENCODE 10.2 +60.7 60700 2.8 TEAD4 ZNF692 ZIC2 SCRT2 MNT CEBPB NFE2 ZNF316 MAFF SCRT1 PHLPP2 RNU6-208P SNORA70D MARVELD3 CALB2 HPR RF00017-2137 piR-57867 lnc-MARVELD3-5
GH16J071630 Enhancer 0.7 Ensembl ENCODE 10.6 +67.8 67787 0.2 FOXA1 CTBP1 ZNF217 CUX1 GATA3 DPF2 JUND RCOR1 FOS SMARCE1 RNU6-208P PHLPP2 TAT SNORA70D ENSG00000260593 MARVELD3 RF00017-2137 lnc-MARVELD3-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA70D on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORA70D Gene

Genomic Locations for SNORA70D Gene
chr16:71,698,567-71,698,701
(GRCh38/hg38)
Size:
135 bases
Orientation:
Minus strand
chr16:71,732,470-71,732,604
(GRCh37/hg19)
Size:
135 bases
Orientation:
Minus strand

Genomic View for SNORA70D Gene

Genes around SNORA70D on UCSC Golden Path with GeneCards custom track
SNORA70D in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA70D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA70D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA70D Gene

Proteins for SNORA70D Gene

Post-translational modifications for SNORA70D Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA70D Gene

Domains & Families for SNORA70D Gene

Gene Families for SNORA70D Gene

genes like me logo Genes that share domains with SNORA70D: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA70D Gene

Function for SNORA70D Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA70D Gene

Localization for SNORA70D Gene

Gene Ontology (GO) - Cellular Components for SNORA70D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA70D: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA70D Gene

Pathways & Interactions for SNORA70D Gene

PathCards logo

SuperPathways for SNORA70D Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA70D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA70D: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA70D Gene

Drugs & Compounds for SNORA70D Gene

No Compound Related Data Available

Transcripts for SNORA70D Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA70D Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004A7D23_9606 snoRNA 135 6

HGNC: 34356,

RefSeq: NR_033337,

Ensembl: ENST00000578836 (view in UCSC) ,

Rfam: RF00156,

snoDB: SNODB187,

snOPY: Homo_sapiens300594,

SNORA70D in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA70D Gene

No ASD Table

Relevant External Links for SNORA70D Gene

GeneLoc Exon Structure for
SNORA70D

No data available for mRNA/cDNA for SNORA70D Gene

Expression for SNORA70D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA70D Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA70D

SOURCE GeneReport for Unigene cluster for SNORA70D Gene:

Hs.725116
genes like me logo Genes that share expression patterns with SNORA70D: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA70D Gene

Orthologs for SNORA70D Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA70D Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA70 31
  • 96 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA70 31
  • 71 (a)
ManyToMany
Dog
(Canis familiaris)
Mammalia SNORA70 31
  • 68 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm22163 31
  • 62 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA70 31
  • 57 (a)
ManyToMany
Species where no ortholog for SNORA70D was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA70D Gene

ENSEMBL:
Gene Tree for SNORA70D (if available)
TreeFam:
Gene Tree for SNORA70D (if available)

Paralogs for SNORA70D Gene

No data available for Paralogs for SNORA70D Gene

Variants for SNORA70D Gene

Additional dbSNP identifiers (rs#s) for SNORA70D Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA70D Gene

Variant ID Type Subtype PubMed ID
nsv1063338 CNV gain 25217958
nsv7285 OTHER inversion 18451855
nsv984350 CNV duplication 23825009

Additional Variant Information for SNORA70D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA70D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA70D Gene

Disorders for SNORA70D Gene

Additional Disease Information for SNORA70D

No disorders were found for SNORA70D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA70D Gene

Publications for SNORA70D Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA70D Gene

Sources for SNORA70D Gene