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Aliases for SNORA70C Gene

Subcategory (RNA class) for SNORA70C Gene


Quality Score for this RNA gene is


Aliases for SNORA70C Gene

  • Small Nucleolar RNA, H/ACA Box 70C 2 3 5
  • Small Nucleolar RNA, H/ACA Box 70C (Retrotransposed) 2 3
  • U70 Type 3 SnoRT 3
  • SNORA70C SnoRNA 3
  • U70C 3

External Ids for SNORA70C Gene

ORGUL Members for SNORA70C Gene

Previous GeneCards Identifiers for SNORA70C Gene

  • GC09U900874
  • GC09M118985
  • GC09M119944
  • GC09M089562

Summaries for SNORA70C Gene

Entrez Gene Summary for SNORA70C Gene

  • This gene produces a small nucleolar RNA (snoRNA) that plays a role in post-transcriptional modification. This snoRNA is a type-3 retrotransposed snoRNA, where the ribosomal protein L10 gene on chromosome X is its parental gene, and this, together with part of the parental gene, was subsequently mobilized into an intron of the astrotactin 2 host gene on chromosome 9. This snoRNA contains a H/ACA box, which serves as a guide for the pseudouridylation of selected bases of ribosomal RNA by forming short duplexes with the 18S rRNA U1692, the target for this snoRNA. This gene is specific to human, chimp and orangutan, and is not found in the genomes of rhesus or marmoset. [provided by RefSeq, Jun 2010]

GeneCards Summary for SNORA70C Gene

SNORA70C (Small Nucleolar RNA, H/ACA Box 70C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA70C Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA70C Gene

Genomics for SNORA70C Gene

GeneHancer (GH) Regulatory Elements for SNORA70C Gene

Promoters and enhancers for SNORA70C Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I117230 Enhancer 0.2 FANTOM5 10.7 -49.0 -48952 0.1 SNORA70C RPL10P3 GC09P117239 LOC105376237 RN7SKP128 ASTN2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA70C on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA70C gene promoter:

Genomic Locations for SNORA70C Gene

Genomic Locations for SNORA70C Gene
136 bases
Minus strand

Genomic View for SNORA70C Gene

Genes around SNORA70C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA70C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA70C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA70C Gene

Proteins for SNORA70C Gene

Post-translational modifications for SNORA70C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA70C Gene

Domains & Families for SNORA70C Gene

Gene Families for SNORA70C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA70C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA70C Gene

Function for SNORA70C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA70C Gene

Localization for SNORA70C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA70C Gene

Pathways & Interactions for SNORA70C Gene

SuperPathways for SNORA70C Gene

No Data Available

Interacting Proteins for SNORA70C Gene

Gene Ontology (GO) - Biological Process for SNORA70C Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA70C Gene

Drugs & Compounds for SNORA70C Gene

No Compound Related Data Available

Transcripts for SNORA70C Gene

mRNA/cDNA for SNORA70C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA70C Gene

No ASD Table

Relevant External Links for SNORA70C Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA70C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA70C Gene:


SOURCE GeneReport for Unigene cluster for SNORA70C Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA70C Gene

Orthologs for SNORA70C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA70C Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA70 34
  • 100 (a)
(Mus musculus)
Mammalia Gm23699 34
  • 77 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA70 34
  • 71 (a)
(Canis familiaris)
Mammalia SNORA70 34
  • 66 (a)
(Danio rerio)
Actinopterygii SNORA70 34
  • 65 (a)
Species where no ortholog for SNORA70C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA70C Gene

Gene Tree for SNORA70C (if available)
Gene Tree for SNORA70C (if available)

Paralogs for SNORA70C Gene

No data available for Paralogs for SNORA70C Gene

Variants for SNORA70C Gene

Sequence variations from dbSNP and Humsavar for SNORA70C Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1001481745 -- 117,182,731(-) C/T upstream_transcript_variant
rs1002563421 -- 117,181,738(-) C/A upstream_transcript_variant
rs1002626455 -- 117,183,074(-) C/G upstream_transcript_variant
rs1002875750 -- 117,180,908(-) G/A downstream_transcript_variant
rs1007071537 -- 117,182,067(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA70C Gene

Variant ID Type Subtype PubMed ID
esv32690 CNV gain 17666407
nsv528743 CNV gain 19592680
nsv7434 OTHER inversion 18451855
nsv982341 CNV duplication 23825009

Additional Variant Information for SNORA70C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA70C Gene

Disorders for SNORA70C Gene

Additional Disease Information for SNORA70C

No disorders were found for SNORA70C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA70C Gene

Publications for SNORA70C Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  2. Genome-wide analyses of retrogenes derived from the human box H/ACA snoRNAs. (PMID: 17175533) Luo Y … Li S (Nucleic acids research 2007) 3 58
  3. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 58
  4. Mammalian small nucleolar RNAs are mobile genetic elements. (PMID: 17154719) Weber MJ (PLoS genetics 2006) 3 58

Products for SNORA70C Gene

Sources for SNORA70C Gene

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