Aliases for SNORA70B Gene

Subcategory (RNA class) for SNORA70B Gene

snoRNA

Number of RNA Genes sources:

2 / 14

Aliases for SNORA70B Gene

  • Small Nucleolar RNA, H/ACA Box 70B 2 3 5
  • Small Nucleolar RNA, H/ACA Box 70B (Retrotransposed) 2 3
  • SNORA70B 2 174
  • SNORA70B SnoRNA 3
  • RF00156 172

External Ids for SNORA70B Gene

Previous GeneCards Identifiers for SNORA70B Gene

  • GC02U901156
  • GC02M061501
  • GC02M061645
  • GC02M061384

Summaries for SNORA70B Gene

GeneCards Summary for SNORA70B Gene

SNORA70B (Small Nucleolar RNA, H/ACA Box 70B) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORA70B include Chromosome 2P16.1-P15 Deletion Syndrome and Meningocele.

Rfam classification for SNORA70B Gene

  • Small nucleolar RNA SNORA70

Additional gene information for SNORA70B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA70B Gene

Genomics for SNORA70B Gene

GeneHancer (GH) Regulatory Elements for SNORA70B Gene

Promoters and enhancers for SNORA70B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J061417 Enhancer 0.4 FANTOM5 500.7 -0.3 -310 0.1 ZNF316 MAFK ENSG00000234624 SNORA70B lnc-XPO1-1 AHSA2P piR-61945-279 USP34
GH02J061415 Enhancer 0.2 Ensembl 500.7 +1.7 1677 0.2 ENSG00000234624 SNORA70B lnc-XPO1-1 lnc-XPO1-3 USP34
GH02J061524 Enhancer 0.8 UCNEbase Ensembl 10.5 -108.2 -108223 5.6 ZBTB48 PRDM6 FEZF1 HLF POLR2A ZNF362 SCRT2 ENSG00000285857 LOC339803 RNU6-1145P ENSG00000234624 SNORA70B CCT4 COMMD1 ENSG00000273302 ENSG00000270820 KX404983
GH02J061368 Enhancer 0.5 Ensembl 10.9 +48.4 48370 1.2 CBFB IRF1 NR2F1 CTCF EGR1 ZBTB33 PRDM4 ZNF24 RUNX3 LOC339803 ENSG00000234624 SNORA70B USP34 ENSG00000230702 FAM161A piR-60051-056 lnc-XPO1-7
GH02J061477 Enhancer 0.5 UCNEbase 10.3 -60.7 -60691 0.3 POLR2G AGO2 ENSG00000234624 SNORA70B CCT4 COMMD1 ENSG00000270820 LOC105377633 piR-60829 XPO1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA70B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA70B gene promoter:
  • Arnt
  • CUTL1
  • FOXD3
  • IRF-7A
  • Nkx3-1
  • Nkx3-1 v1
  • STAT5A
  • STAT5B

Genomic Locations for SNORA70B Gene

Genomic Locations for SNORA70B Gene
chr2:61,417,244-61,417,378
(GRCh38/hg38)
Size:
135 bases
Orientation:
Minus strand
chr2:61,644,379-61,644,513
(GRCh37/hg19)
Size:
135 bases
Orientation:
Minus strand

Genomic View for SNORA70B Gene

Genes around SNORA70B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA70B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA70B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA70B Gene

Proteins for SNORA70B Gene

Post-translational modifications for SNORA70B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA70B Gene

Domains & Families for SNORA70B Gene

Gene Families for SNORA70B Gene

genes like me logo Genes that share domains with SNORA70B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA70B Gene

Function for SNORA70B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA70B Gene

Localization for SNORA70B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA70B Gene

Pathways & Interactions for SNORA70B Gene

PathCards logo

SuperPathways for SNORA70B Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORA70B Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA70B Gene

Drugs & Compounds for SNORA70B Gene

No Compound Related Data Available

Transcripts for SNORA70B Gene

mRNA/cDNA for SNORA70B Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA70B Gene

No ASD Table

Relevant External Links for SNORA70B Gene

GeneLoc Exon Structure for
SNORA70B

Expression for SNORA70B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA70B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA70B

SOURCE GeneReport for Unigene cluster for SNORA70B Gene:

Hs.675825
genes like me logo Genes that share expression patterns with SNORA70B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA70B Gene

Orthologs for SNORA70B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA70B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA70 31
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA70 31
  • 76 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA70 31
  • 71 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23902 31
  • 66 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA70 31
  • 65 (a)
ManyToMany
Species where no ortholog for SNORA70B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA70B Gene

ENSEMBL:
Gene Tree for SNORA70B (if available)
TreeFam:
Gene Tree for SNORA70B (if available)

Paralogs for SNORA70B Gene

No data available for Paralogs for SNORA70B Gene

Variants for SNORA70B Gene

Additional dbSNP identifiers (rs#s) for SNORA70B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA70B Gene

Variant ID Type Subtype PubMed ID
nsv1014905 CNV gain 25217958
nsv7313 OTHER inversion 18451855
nsv961408 CNV duplication 23825009

Additional Variant Information for SNORA70B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA70B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA70B Gene

Disorders for SNORA70B Gene

MalaCards: The human disease database

(2) MalaCards diseases for SNORA70B Gene - From: DISEASES

Disorder Aliases PubMed IDs
chromosome 2p16.1-p15 deletion syndrome
  • 2p15-p16.1 microdeletion syndrome
meningocele
  • spinal meningocele
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORA70B

genes like me logo Genes that share disorders with SNORA70B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA70B Gene

Publications for SNORA70B Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 54

Products for SNORA70B Gene

Sources for SNORA70B Gene