Aliases for SNORA68B Gene

Subcategory (RNA class) for SNORA68B Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORA68B Gene

  • Small Nucleolar RNA, H/ACA Box 68B 2 3 5
  • SNORA68B 2 5
  • SNODB784 177
  • SNORA68 170
  • RF00263 168

External Ids for SNORA68B Gene

Previous GeneCards Identifiers for SNORA68B Gene

  • GC00U936697
  • GC19U902313

Summaries for SNORA68B Gene

GeneCards Summary for SNORA68B Gene

SNORA68B (Small Nucleolar RNA, H/ACA Box 68B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA68B Gene

  • Small nucleolar RNA SNORA68

Additional gene information for SNORA68B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA68B Gene

Genomics for SNORA68B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA68B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J032580 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.5 +27.0 27033 2.5 ZNF221 SP1 GATAD2A HNRNPL PRDM10 IKZF1 ZNF692 POLR2A ZNF174 BACH1 PDCD5 NONHSAG025459.2 CEP89 GPATCH1 ANKRD27 SNORA68B NONHSAG025460.2 RGS9BP
GH19J032669 Enhancer 1 ENCODE 11.3 -61.6 -61644 0.9 GATAD2A ZBTB33 ZNF629 TFE3 LEF1 IKZF1 RCOR2 JUND PRDM1 MTA2 ANKRD27 GPATCH1 SNORA68B RGS9BP PDCD5 ENSG00000267557
GH19J032671 Enhancer 0.9 ENCODE 11.3 -63.4 -63400 1.4 LEF1 IKZF1 JUND MTA2 PKNOX1 MTA1 BRD9 DPF2 HDAC1 SOX6 ANKRD27 SNORA68B RGS9BP ENSG00000267557 PDCD5
GH19J032570 Enhancer 0.9 Ensembl ENCODE 11.5 +38.1 38058 0.5 CTCF IKZF1 PRDM1 MTA1 REST RAD21 ZNF600 SCRT2 SOX13 ZNF512B piR-31470-263 SNORA68B PDCD5 ANKRD27 RF00017-2925 DPY19L3
GH19J032908 Enhancer 0.8 Ensembl 10 -301.0 -301032 1 LEF1 JUND MTA1 NR2C1 HDAC1 SOX6 FOXJ2 EP300 ZNF766 HMBOX1 SNORA68B piR-48759-155 SLC7A9 lnc-RHPN2-1 CEP89
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA68B on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORA68B Gene

Genomic Locations for SNORA68B Gene
chr19:32,608,337-32,608,469
(GRCh38/hg38)
Size:
133 bases
Orientation:
Minus strand
chr19:33,099,243-33,099,375
(GRCh37/hg19)
Size:
133 bases
Orientation:
Minus strand

Genomic View for SNORA68B Gene

Genes around SNORA68B on UCSC Golden Path with GeneCards custom track
SNORA68B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA68B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA68B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA68B Gene

Proteins for SNORA68B Gene

Post-translational modifications for SNORA68B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA68B Gene

Domains & Families for SNORA68B Gene

Gene Families for SNORA68B Gene

genes like me logo Genes that share domains with SNORA68B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA68B Gene

Function for SNORA68B Gene

Phenotypes From GWAS Catalog for SNORA68B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA68B Gene

Localization for SNORA68B Gene

Gene Ontology (GO) - Cellular Components for SNORA68B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA68B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA68B Gene

Pathways & Interactions for SNORA68B Gene

PathCards logo

SuperPathways for SNORA68B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA68B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA68B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA68B Gene

Drugs & Compounds for SNORA68B Gene

No Compound Related Data Available

Transcripts for SNORA68B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA68B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006ACA80_9606 snoRNA 133 6

HGNC: 52213,

RefSeq: NR_145718,

Ensembl: ENST00000364518 (view in UCSC) ,

Rfam: RF00263,

snoDB: SNODB784,

snOPY: Homo_sapiens300561,

SNORA68B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA68B Gene

No ASD Table

Relevant External Links for SNORA68B Gene

GeneLoc Exon Structure for
SNORA68B

No data available for mRNA/cDNA for SNORA68B Gene

Expression for SNORA68B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA68B Gene

Orthologs for SNORA68B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA68B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA68 31
  • 98 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA68 31
  • 84 (a)
OneToMany
Cow
(Bos Taurus)
Mammalia SNORA68 31
  • 83 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Snora68 31
  • 73 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA68 31 31 31
  • 63 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA68 31 31
  • 51 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves SNORA68 31
  • 58 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA68 31
  • 57 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA68 31 31
  • 56 (a)
ManyToMany
Species where no ortholog for SNORA68B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA68B Gene

ENSEMBL:
Gene Tree for SNORA68B (if available)
TreeFam:
Gene Tree for SNORA68B (if available)

Paralogs for SNORA68B Gene

No data available for Paralogs for SNORA68B Gene

Variants for SNORA68B Gene

Additional dbSNP identifiers (rs#s) for SNORA68B Gene

Additional Variant Information for SNORA68B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA68B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA68B Gene

Disorders for SNORA68B Gene

Additional Disease Information for SNORA68B

No disorders were found for SNORA68B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA68B Gene

Publications for SNORA68B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3

No data available for Mastermind for SNORA68B Gene

Products for SNORA68B Gene

Sources for SNORA68B Gene