SNORA65 Gene (RNA Gene)

Small Nucleolar RNA, H/ACA Box 65

GC09M127448
GIFtS:
15
See more...

Aliases for SNORA65 Gene

Data sources for SNORA65 Gene:

Subcategory (RNA class) for SNORA65 Gene

snoRNA

Aliases for SNORA65 Gene

External Ids for SNORA65 Gene

Previous HGNC Symbols for SNORA65 Gene

  • RNU65

Previous GeneCards Identifiers for SNORA65 Gene

  • GC09M129251
  • GC09M130210
  • GC09M099826

Summaries for SNORA65 Gene

GeneCards Summary for SNORA65 Gene

SNORA65 (Small Nucleolar RNA, H/ACA Box 65) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA65 Gene

  • Small nucleolar RNA SNORA65

Additional gene information for SNORA65 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA65 Gene

Genomics for SNORA65 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SNORA65 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA65 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA65 gene promoter:
  • AP-4
  • AREB6
  • E2F
  • E2F-1
  • FAC1
  • LCR-F1
  • Lmo2
  • NF-E2
  • NF-E2 p45
  • TGIF

Genomic Locations for SNORA65 Gene

Latest Assembly
chr9:127,448,501-127,448,637
(GRCh38/hg38)
Size:
137 bases
Orientation:
Minus strand

Previous Assembly
chr9:130,210,781-130,210,916
(GRCh37/hg19 by Entrez Gene)
Size:
136 bases
Orientation:
Minus strand

chr9:130,210,780-130,210,909
(GRCh37/hg19 by Ensembl)
Size:
130 bases
Orientation:
Minus strand

Genomic View for SNORA65 Gene

Genes around SNORA65 on UCSC Golden Path with GeneCards custom track
SNORA65 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORA65 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA65 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORA65 Gene

Proteins for SNORA65 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for SNORA65 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA65 Gene

Domains & Families for SNORA65 Gene

Gene Families for SNORA65 Gene

HGNC:
genes like me logo Genes that share domains with SNORA65: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA65 Gene

Function for SNORA65 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for SNORA65 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA65 Gene

Localization for SNORA65 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA65 gene
Compartment Confidence
plasma membrane 1
extracellular 1
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORA65 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA65: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA65 Gene

Pathways & Interactions for SNORA65 Gene

PathCards logo

SuperPathways for SNORA65 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA65 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA65: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA65 Gene

Drugs & Compounds for SNORA65 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for SNORA65 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA65 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000063C47F_9606 snoRNA 130 3

Ensembl: ENST00000364432 (view in UCSC) ,

Rfam: RF00302,

snoDB: SNODB360,

URS000075B118_9606 snoRNA 136 2

RefSeq: NR_002449,

snoDB: SNODB1310,

URS00008159A6_9606 snoRNA 137 2

snoDB: SNODB1374,

snOPY: Homo_sapiens300577,

URS0001BC60DC_9606 snoRNA 130 1

Rfam: RF00302,

URS0001BBF0EA_9606 snoRNA 129 1

Rfam: RF00302,

SNORA65 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA65 Gene

1 NCBI additional mRNA sequence :

CRISPR products for research

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA65 Gene

No ASD Table

Relevant External Links for SNORA65 Gene

GeneLoc Exon Structure for
SNORA65

Expression for SNORA65 Gene

Products:

  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA65 Gene

mRNA expression in normal human tissues for SNORA65 Gene
mRNA expression by GTEx for SNORA65 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA65

genes like me logo Genes that share expression patterns with SNORA65: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA65 Gene

Orthologs for SNORA65 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA65 Gene

Organism Taxonomy Gene Similarity Type Details
Dog
(Canis familiaris)
 Mammalia SNORA65 31 31
  • 98 (a)
 OneToMany
Chimpanzee
(Pan troglodytes)
 Mammalia SNORA65 31
  • 98 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia SNORA65 31 31 31 31
  • 95 (a)
 OneToMany
Mouse
(Mus musculus)
 Mammalia Snora65 31
  • 92 (a)
 OneToMany
Gm24613 31
  • 92 (a)
 OneToMany
Gm26440 31
  • 91 (a)
 OneToMany
Gm22807 31
  • 88 (a)
 OneToMany
Gm26075 31
  • 80 (a)
 OneToMany
Gm25379 31
  • 70 (a)
 OneToMany
Oppossum
(Monodelphis domestica)
 Mammalia SNORA65 31
  • 88 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORA65 31 31 31
  • 64 (a)
 OneToMany
Chicken
(Gallus gallus)
 Aves SNORA65 31
  • 77 (a)
 OneToOne
Lizard
(Anolis carolinensis)
 Reptilia SNORA65 31
  • 71 (a)
 OneToOne
Zebrafish
(Danio rerio)
 Actinopterygii SNORA65 31
  • 60 (a)
 OneToOne
Species where no ortholog for SNORA65 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA65 Gene

ENSEMBL:
Gene Tree for SNORA65 (if available)
TreeFam:
Gene Tree for SNORA65 (if available)

Paralogs for SNORA65 Gene

No data available for Paralogs for SNORA65 Gene

Variants for SNORA65 Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORA65 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORA65 Gene

Variant ID Type Subtype PubMed ID
nsv972452 CNV duplication 23825009

Additional Variant Information for SNORA65 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA65

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA65 Gene

Disorders for SNORA65 Gene

Additional Disease Information for SNORA65

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORA65 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA65 Gene

Publications for SNORA65 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P … Kiss T (Genes & development 1997) 2 3
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

ExternalLinks

View latest publications for SNORA65 gene in Mastermind

Products for SNORA65 Gene

Sources for SNORA65 Gene