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Aliases for SNORA64 Gene

Subcategory (RNA class) for SNORA64 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA64 Gene

  • Small Nucleolar RNA, H/ACA Box 64 2 3 5
  • RNA, U64 Small Nucleolar 2 3
  • U64 Small Nucleolar RNA 3
  • U64 SnoRNA 3
  • RNU64 3
  • U64 3

External Ids for SNORA64 Gene

Previous HGNC Symbols for SNORA64 Gene

  • RNU64

Previous GeneCards Identifiers for SNORA64 Gene

  • GC16M001958
  • GC16M002016
  • GC16M002018
  • GC16M002022
  • GC16M002024
  • GC16M002026
  • GC16M002035
  • GC16M002040
  • GC16M001970
  • GC16M001974
  • GC16M001982
  • GC16M002006
  • GC16M002044
  • GC16M002054
  • GC16M002064

Summaries for SNORA64 Gene

GeneCards Summary for SNORA64 Gene

SNORA64 (Small Nucleolar RNA, H/ACA Box 64) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA64 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA64 Gene

Genomics for SNORA64 Gene

GeneHancer (GH) Regulatory Elements for SNORA64 Gene

Promoters and enhancers for SNORA64 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I001962 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 601 -1.1 -1116 4.1 HDGF HNRNPUL1 PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ENSG00000255513 SNORA64 SNHG9 RPS2 GC16M001962 GC16M001963 GC16M001965 GC16M001966 GC16P001995 GC16P002197
GH16I001308 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 105.8 +652.4 652352 5.2 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 UBE2I LOC102723815 WDR90 CRAMP1 TELO2 ENSG00000261505 E4F1 TSC2 ENSG00000260051 IFT140
GH16I002147 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 46.3 -192.7 -192684 17.4 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 TRAF7 SNORD60 SNHG19 ENSG00000281010 GC16M002158 GC16M002156 RAB26 ENSG00000261505 ENSG00000260051 SRRM2
GH16I000981 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 45.5 +981.7 981705 1.6 ZNF493 ZNF133 SIN3A GLI4 ZNF2 GLIS2 ZNF213 ZNF416 KLF7 ZNF548 ENSG00000260807 LMF1 SOX8 GC16M000980 GC16M000982 GC16P001002 WDR90 CRAMP1 ENSG00000261505 UBE2I
GH16I002266 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 42.2 -305.1 -305106 3.2 ZFP64 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC ZNF610 GLIS1 RNPS1 LOC106660606 GC16M002266 GC16M002267 ZNF263 ENSG00000260051 ENSG00000261505 E4F1 AMDHD2 TSC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA64 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA64 gene promoter:

Genomic Locations for SNORA64 Gene

Genomic Locations for SNORA64 Gene
chr16:1,962,973-1,963,106
(GRCh38/hg38)
Size:
134 bases
Orientation:
Minus strand
chr16:2,012,974-2,013,107
(GRCh37/hg19)

Genomic View for SNORA64 Gene

Genes around SNORA64 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA64 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA64 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA64 Gene

Proteins for SNORA64 Gene

Post-translational modifications for SNORA64 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA64 Gene

Domains & Families for SNORA64 Gene

Gene Families for SNORA64 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA64: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA64 Gene

Function for SNORA64 Gene

Phenotypes From GWAS Catalog for SNORA64 Gene

Gene Ontology (GO) - Molecular Function for SNORA64 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 10757788
genes like me logo Genes that share ontologies with SNORA64: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA64 Gene

Localization for SNORA64 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA64 Gene

Pathways & Interactions for SNORA64 Gene

SuperPathways for SNORA64 Gene

No Data Available

Interacting Proteins for SNORA64 Gene

Gene Ontology (GO) - Biological Process for SNORA64 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA64 Gene

Drugs & Compounds for SNORA64 Gene

No Compound Related Data Available

Transcripts for SNORA64 Gene

mRNA/cDNA for SNORA64 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA64 Gene

No ASD Table

Relevant External Links for SNORA64 Gene

GeneLoc Exon Structure for
SNORA64
ECgene alternative splicing isoforms for
SNORA64

Expression for SNORA64 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA64 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA64 Gene:

SNORA64

SOURCE GeneReport for Unigene cluster for SNORA64 Gene:

Hs.745496
genes like me logo Genes that share expression patterns with SNORA64: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA64 Gene

Orthologs for SNORA64 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA64 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA64 34
  • 99 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA64 34
  • 57 (a)
OneToMany
Species where no ortholog for SNORA64 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA64 Gene

ENSEMBL:
Gene Tree for SNORA64 (if available)
TreeFam:
Gene Tree for SNORA64 (if available)

Paralogs for SNORA64 Gene

No data available for Paralogs for SNORA64 Gene

Variants for SNORA64 Gene

Sequence variations from dbSNP and Humsavar for SNORA64 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000994330 -- 1,963,995(-) G/A upstream_transcript_variant
rs1001274604 -- 1,963,822(-) C/G/T upstream_transcript_variant
rs1001755957 -- 1,964,845(-) G/A upstream_transcript_variant
rs1003181864 -- 1,962,554(-) C/T downstream_transcript_variant
rs1003786438 -- 1,964,877(-) T/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA64 Gene

Variant ID Type Subtype PubMed ID
dgv4858n54 CNV loss 21841781
esv2422427 CNV duplication 17116639
nsv1160329 CNV deletion 26073780
nsv471070 CNV gain 18288195
nsv571179 CNV loss 21841781
nsv833120 CNV loss 17160897
nsv952901 CNV deletion 24416366
nsv984249 CNV duplication 23825009

Additional Variant Information for SNORA64 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA64

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA64 Gene

Disorders for SNORA64 Gene

Additional Disease Information for SNORA64

No disorders were found for SNORA64 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA64 Gene

Publications for SNORA64 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. Purification of human telomerase complexes identifies factors involved in telomerase biogenesis and telomere length regulation. (PMID: 18082603) Fu D … Collins K (Molecular cell 2007) 3 58
  5. In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs. (PMID: 10757788) Dragon F … Filipowicz W (Molecular and cellular biology 2000) 3 58

Products for SNORA64 Gene

Sources for SNORA64 Gene

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