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Aliases for SNORA63 Gene

Subcategory (RNA class) for SNORA63 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA63 Gene

  • Small Nucleolar RNA, H/ACA Box 63 2 3 5
  • RNA, U107 Small Nucleolar 2 3
  • RNA, Small Nucleolar E3 3
  • SNORA63A 3
  • ElF-4AII 3
  • RNU107 3
  • E3-2 3
  • RNE3 3
  • E3 3

External Ids for SNORA63 Gene

Previous HGNC Symbols for SNORA63 Gene

  • RNE3
  • RNU107

Previous GeneCards Identifiers for SNORA63 Gene

  • GC03P187995
  • GC03P187998
  • GC03P186500
  • GC03P186521
  • GC03P186527
  • GC03P186532
  • GC03P186538
  • GC03P186547
  • GC03P186555
  • GC03P186573
  • GC03P186790
  • GC03P186796
  • GC03P186801
  • GC03P186806
  • GC03P186812
  • GC03P186817
  • GC03P186822

Summaries for SNORA63 Gene

GeneCards Summary for SNORA63 Gene

SNORA63 (Small Nucleolar RNA, H/ACA Box 63) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA63 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA63 Gene

Genomics for SNORA63 Gene

GeneHancer (GH) Regulatory Elements for SNORA63 Gene

Promoters and enhancers for SNORA63 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I186782 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.6 -1553 7.1 CLOCK FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 MEF2D SNORA4 ENSG00000200418 SNORA81 EIF4A2 ENSG00000263826 GC03P186785 GC03P186828 GC03P186831 GC03P186832 GC03P186834
GH03I187129 Enhancer 1.2 FANTOM5 Ensembl ENCODE 21.2 +343.3 343281 2.4 IRF2 FOXA2 JUN MAX BATF KLF5 ZNF507 FOSL1 GATA3 ZNF26 SNORA81 ENSG00000200418 SNORA63 SNORA4 TBCCD1 RPL39L EIF4A2 ADIPOQ RFC4 RTP4
GH03I186930 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 9.8 +144.7 144699 4.6 HDGF FOXA2 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 POLR2B ST6GAL1 GC03P186932 SNORA4 RFC4 TRA2B TBCCD1 SNORA81 ADIPOQ ENSG00000200418 SNORA63
GH03I186570 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.7 -216.6 -216603 2.3 HNRNPUL1 PKNOX1 SMAD1 MLX ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 TBCCD1 DNAJB11 TRA2B ENSG00000200418 SNORA4 SNORA81 RFC4 RPS20P14 SNORA63 CRYGS
GH03I186824 Promoter/Enhancer 1.5 Ensembl ENCODE 11.4 +39.2 39222 3.3 ATF1 ARID4B SIN3A BRCA1 ZNF48 TCF12 POLR2B GLIS2 ZNF143 ZNF207 ENSG00000231982 LINC02043 ENSG00000200418 RFC4 TRA2B TBCCD1 SNORA63 SNORA81 EIF4A2 ADIPOQ-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA63 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA63 gene promoter:

Genomic Locations for SNORA63 Gene

Genomic Locations for SNORA63 Gene
chr3:186,787,299-186,787,433
(GRCh38/hg38)
Size:
135 bases
Orientation:
Plus strand
chr3:186,505,088-186,505,222
(GRCh37/hg19)

Genomic View for SNORA63 Gene

Genes around SNORA63 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA63 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA63 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA63 Gene

Proteins for SNORA63 Gene

Post-translational modifications for SNORA63 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA63 Gene

Domains & Families for SNORA63 Gene

Gene Families for SNORA63 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA63: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA63 Gene

Function for SNORA63 Gene

Phenotypes From GWAS Catalog for SNORA63 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA63 Gene

Localization for SNORA63 Gene

Gene Ontology (GO) - Cellular Components for SNORA63 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0072588 box H/ACA RNP complex IDA 10757788
genes like me logo Genes that share ontologies with SNORA63: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA63 Gene

Pathways & Interactions for SNORA63 Gene

SuperPathways for SNORA63 Gene

No Data Available

Interacting Proteins for SNORA63 Gene

Gene Ontology (GO) - Biological Process for SNORA63 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA63 Gene

Drugs & Compounds for SNORA63 Gene

No Compound Related Data Available

Transcripts for SNORA63 Gene

mRNA/cDNA for SNORA63 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA63 Gene

No ASD Table

Relevant External Links for SNORA63 Gene

GeneLoc Exon Structure for
SNORA63
ECgene alternative splicing isoforms for
SNORA63

Expression for SNORA63 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA63 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA63 Gene:

SNORA63
genes like me logo Genes that share expression patterns with SNORA63: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA63 Gene

Orthologs for SNORA63 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA63 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA63 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA63 34
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA63 34
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26447 34
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA63 34 34 34
  • 65 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA63 34
  • 58 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA63 34
  • 77 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA63 34
  • 75 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA63 34 34 34 34 34
  • 69 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORA63 34
  • 57 (a)
OneToMany
Species where no ortholog for SNORA63 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA63 Gene

ENSEMBL:
Gene Tree for SNORA63 (if available)
TreeFam:
Gene Tree for SNORA63 (if available)

Paralogs for SNORA63 Gene

No data available for Paralogs for SNORA63 Gene

Variants for SNORA63 Gene

Sequence variations from dbSNP and Humsavar for SNORA63 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000369195 -- 186,786,981(+) T/C/G upstream_transcript_variant
rs1000742171 -- 186,786,795(+) G/C upstream_transcript_variant
rs1001137050 -- 186,785,598(+) C/T upstream_transcript_variant
rs1003188684 -- 186,787,055(+) C/T upstream_transcript_variant
rs1003226118 -- 186,785,568(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA63 Gene

Variant ID Type Subtype PubMed ID
nsv1012615 CNV gain 25217958
esv3893839 CNV gain 25118596
esv34136 CNV loss 18971310
esv2759206 CNV loss 17122850
dgv5005n100 CNV gain 25217958

Additional Variant Information for SNORA63 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA63

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA63 Gene

Disorders for SNORA63 Gene

Additional Disease Information for SNORA63

No disorders were found for SNORA63 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA63 Gene

Publications for SNORA63 Gene

  1. Three small nucleolar RNAs of unique nucleotide sequences. (PMID: 8421699) Ruff EA … Eliceiri GL (Proceedings of the National Academy of Sciences of the United States of America 1993) 2 3 58
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs. (PMID: 10757788) Dragon F … Filipowicz W (Molecular and cellular biology 2000) 3 58
  5. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 3 58

Products for SNORA63 Gene

Sources for SNORA63 Gene

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