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Aliases for SNORA62 Gene

Subcategory (RNA class) for SNORA62 Gene

snoRNA

Quality Score for this RNA gene is

12

Aliases for SNORA62 Gene

  • Small Nucleolar RNA, H/ACA Box 62 2 3 5
  • RNA, U108 Small Nucleolar 2 3
  • RNA, Small Nucleolar E2 3
  • RNU108 3
  • E2-1 3
  • RNE2 3
  • E2 3

External Ids for SNORA62 Gene

Previous HGNC Symbols for SNORA62 Gene

  • RNE2
  • RNU108

Previous GeneCards Identifiers for SNORA62 Gene

  • GC03P039430
  • GC03P039432
  • GC03P039450
  • GC03P039454
  • GC03P039458
  • GC03P039460
  • GC03P039466
  • GC03P039479
  • GC03P039437
  • GC03P039441
  • GC03P039447
  • GC03P039465
  • GC03P039472
  • GC03P039477
  • GC03P039486

Summaries for SNORA62 Gene

GeneCards Summary for SNORA62 Gene

SNORA62 (Small Nucleolar RNA, H/ACA Box 62) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORA62 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA62/SNORA6 family: The members of this family belong to the H/ACA class of snoRNAs which are predicted to guide the sites of modification of uridines to pseudouridines [3]. This family includes human snoRNAs E2 (SNORA62), ACA6 (SNORA6) and M2 and mouse MBI-136. In humans both E2 and ACA6 are encoded in the introns on the same host gene (LAMR1)[1,3]. E2 is involved in the processing of eukaryotic pre-rRNA and has regions of complementarity to 28S rRNA [2]. ACA6 is predicted to guide the pseudouridylation of residue U3616 of 28S rRNA [5].

View fRNAdb secondary structures for SNORA62

Additional gene information for SNORA62 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA62 Gene

Genomics for SNORA62 Gene

GeneHancer (GH) Regulatory Elements for SNORA62 Gene

Promoters and enhancers for SNORA62 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I039411 Enhancer 0.4 ENCODE 550.8 +0.8 771 0.2 POLR2A HLF GC03P039410 GC03P039411 GC03P039412 GC03P039414 PIR53261 SNORA62 PIR46422 GC03P039422 GC03P039421 GC03P039420
GH03I039412 Enhancer 0.4 ENCODE 550.8 +0.5 511 0.1 POLR2B POLR2A GC03P039410 GC03P039411 GC03P039414 PIR53261 SNORA62 PIR46422 GC03P039422 GC03P039421 GC03P039420 GC03P039419
GH03I039410 Enhancer 0.3 ENCODE 550.8 -0.6 -569 0.2 POLR2A GC03P039410 GC03P039411 GC03P039414 GC03P039416 PIR46422 PIR53261 SNORA62 GC03P039422 GC03P039421 GC03P039420
GH03I039145 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 22.4 -260.0 -259957 10.7 CLOCK FEZF1 DMAP1 IRF4 YY1 E2F8 ZNF143 ZNF263 SP3 MEF2D CSRNP1 ENSG00000283849 LOC101928263 GORASP1 TTC21A SNORA62 CX3CR1 XIRP1 MOBP ACVR2B-AS1
GH03I039403 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 23.3 -4.0 -3997 6.2 PKNOX1 CLOCK FOXA2 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 RPSA GC03M039393 GC03P039409 GC03P039413 SNORA6 GC03P039417 SNORA62 GORASP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA62 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA62 gene promoter:

Genomic Locations for SNORA62 Gene

Genomic Locations for SNORA62 Gene
chr3:39,411,054-39,411,207
(GRCh38/hg38)
Size:
154 bases
Orientation:
Plus strand
chr3:39,452,545-39,452,698
(GRCh37/hg19)

Genomic View for SNORA62 Gene

Genes around SNORA62 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA62 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA62 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA62 Gene

ORGUL Member Location for SNORA62 Gene

ORGUL Member Location for SNORA62 gene

Proteins for SNORA62 Gene

Post-translational modifications for SNORA62 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA62 Gene

Domains & Families for SNORA62 Gene

Gene Families for SNORA62 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA62: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA62 Gene

Function for SNORA62 Gene

Phenotypes From GWAS Catalog for SNORA62 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA62 Gene

Localization for SNORA62 Gene

Gene Ontology (GO) - Cellular Components for SNORA62 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0072588 box H/ACA RNP complex IDA 10757788
genes like me logo Genes that share ontologies with SNORA62: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA62 Gene

Pathways & Interactions for SNORA62 Gene

SuperPathways for SNORA62 Gene

No Data Available

Interacting Proteins for SNORA62 Gene

Gene Ontology (GO) - Biological Process for SNORA62 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA62 Gene

Drugs & Compounds for SNORA62 Gene

No Compound Related Data Available

Transcripts for SNORA62 Gene

fRNAdb Secondary structures for SNORA62 Gene

  • FR143100

mRNA/cDNA for SNORA62 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA62 Gene

No ASD Table

Relevant External Links for SNORA62 Gene

GeneLoc Exon Structure for
SNORA62
ECgene alternative splicing isoforms for
SNORA62

Expression for SNORA62 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA62 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MaxQB and MOPED for SNORA62 Gene



NURSA nuclear receptor signaling pathways regulating expression of SNORA62 Gene:

SNORA62
genes like me logo Genes that share expression patterns with SNORA62: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA62 Gene

Orthologs for SNORA62 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA62 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA62 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA62 34
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA62 34
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snora62 34
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA62 34
  • 84 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA62 34
  • 70 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA62 34
  • 71 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA62 34
  • 74 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA62 34
  • 52 (a)
OneToMany
Species where no ortholog for SNORA62 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA62 Gene

ENSEMBL:
Gene Tree for SNORA62 (if available)
TreeFam:
Gene Tree for SNORA62 (if available)

Paralogs for SNORA62 Gene

No data available for Paralogs for SNORA62 Gene

Variants for SNORA62 Gene

Sequence variations from dbSNP and Humsavar for SNORA62 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs397514760 pathogenic, Asplenia, isolated congenital 39,411,688(+) C/G/T downstream_transcript_variant
rs397514761 pathogenic, Asplenia, isolated congenital 39,411,706(+) C/T downstream_transcript_variant
rs2269350 benign, not specified 39,411,669(+) G/A downstream_transcript_variant
rs1000971865 -- 39,409,723(+) T/A upstream_transcript_variant
rs1001148912 -- 39,409,257(+) A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA62 Gene

Variant ID Type Subtype PubMed ID
nsv963310 CNV duplication 23825009

Additional Variant Information for SNORA62 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA62

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA62 Gene

Disorders for SNORA62 Gene

Additional Disease Information for SNORA62

No disorders were found for SNORA62 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA62 Gene

Publications for SNORA62 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1 2 3 58
  2. Three small nucleolar RNAs of unique nucleotide sequences. (PMID: 8421699) Ruff EA … Eliceiri GL (Proceedings of the National Academy of Sciences of the United States of America 1993) 1 2 3 58
  3. Genes for E1, E2, and E3 small nucleolar RNAs. (PMID: 8415643) Nag MK … Eliceiri GL (Proceedings of the National Academy of Sciences of the United States of America 1993) 2 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  5. In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs. (PMID: 10757788) Dragon F … Filipowicz W (Molecular and cellular biology 2000) 3 58

Products for SNORA62 Gene

Sources for SNORA62 Gene

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