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Aliases for SNORA61 Gene

Subcategory (RNA class) for SNORA61 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA61 Gene

  • Small Nucleolar RNA, H/ACA Box 61 2 3 5
  • ACA61 SnoRNA 3
  • ACA61 3

External Ids for SNORA61 Gene

Previous GeneCards Identifiers for SNORA61 Gene

  • GC01M028778
  • GC01M028907
  • GC01M028910
  • GC01M028917
  • GC01M028581
  • GC01M028586
  • GC01M028590
  • GC01M028593
  • GC01M028597
  • GC01M028600
  • GC01M028604

Summaries for SNORA61 Gene

GeneCards Summary for SNORA61 Gene

SNORA61 (Small Nucleolar RNA, H/ACA Box 61) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA61 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA61 Gene

Genomics for SNORA61 Gene

GeneHancer (GH) Regulatory Elements for SNORA61 Gene

Promoters and enhancers for SNORA61 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I028578 Promoter/Enhancer 1.6 Ensembl ENCODE 550.8 -1.3 -1307 4.5 ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC SNHG12 GC01M028625 SNORA61 SNORA44 SNORA16A PIR59489 GC01M028628 GC01M028624 GC01M028623 GC01M028618
GH01I028581 Enhancer 0.7 ENCODE 550.8 +1.9 1929 0.3 PAF1 SMAD5 ZNF10 ZBED1 BACH1 ZNF2 ZNF48 ZSCAN9 RFXANK POLR2A SNORA61 SNORD99 PIR59489 GC01M028625 GC01M028624 GC01M028616 GC01M028584 TRNAU1AP
GH01I028580 Enhancer 0.5 ENCODE 550.8 +1.5 1549 0.2 PAF1 POLR2A BACH1 ZNF600 ELF1 ZNF2 SUPT5H GC01M028584 GC01M028616 GC01M028624 GC01M028625 PIR59489 SNORD99 SNORA61 PHACTR4 TRNAU1AP
GH01I028551 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.8 +26.7 26722 2.5 HDGF PKNOX1 SMAD1 ARNT ARID4B NEUROD1 SIN3A YBX1 DMAP1 ZBTB7B TRNAU1AP PRDX3P2 SNORA61 SNORD99 SNORA73B SNHG3 RCC1 PHACTR4 RAB42 DNAJC8
GH01I028416 Enhancer 1.2 Ensembl ENCODE 10.6 +162.5 162527 2.4 PKNOX1 ATF1 ARNT FEZF1 ZNF2 TCF12 ZNF766 E2F8 ATF7 FOS PHACTR4 SNORD99 SNORA61 ENSG00000206779
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA61 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA61 gene promoter:

Genomic Locations for SNORA61 Gene

Genomic Locations for SNORA61 Gene
chr1:28,579,764-28,579,893
(GRCh38/hg38)
Size:
130 bases
Orientation:
Minus strand
chr1:28,905,050-28,909,495
(GRCh37/hg19)

Genomic View for SNORA61 Gene

Genes around SNORA61 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA61 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA61 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA61 Gene

Proteins for SNORA61 Gene

Post-translational modifications for SNORA61 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA61 Gene

Domains & Families for SNORA61 Gene

Gene Families for SNORA61 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA61: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA61 Gene

Function for SNORA61 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA61 Gene

Localization for SNORA61 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA61 Gene

Pathways & Interactions for SNORA61 Gene

SuperPathways for SNORA61 Gene

No Data Available

Interacting Proteins for SNORA61 Gene

Gene Ontology (GO) - Biological Process for SNORA61 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA61 Gene

Drugs & Compounds for SNORA61 Gene

No Compound Related Data Available

Transcripts for SNORA61 Gene

mRNA/cDNA for SNORA61 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA61 Gene

No ASD Table

Relevant External Links for SNORA61 Gene

GeneLoc Exon Structure for
SNORA61
ECgene alternative splicing isoforms for
SNORA61

Expression for SNORA61 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA61 Gene:

SNORA61
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA61 Gene

Orthologs for SNORA61 Gene

Evolution for SNORA61 Gene

ENSEMBL:
Gene Tree for SNORA61 (if available)
TreeFam:
Gene Tree for SNORA61 (if available)

No data available for Orthologs for SNORA61 Gene

Paralogs for SNORA61 Gene

No data available for Paralogs for SNORA61 Gene

Variants for SNORA61 Gene

Sequence variations from dbSNP and Humsavar for SNORA61 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000018185 -- 28,580,922(-) C/A/G/T upstream_transcript_variant
rs1000600385 -- 28,579,545(-) G/A downstream_transcript_variant
rs1001430380 -- 28,579,825(-) A/G non_coding_transcript_variant
rs1002736529 -- 28,580,757(-) A/C upstream_transcript_variant
rs1003537312 -- 28,581,337(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA61 Gene

Variant ID Type Subtype PubMed ID
nsv545916 CNV gain 21841781
esv2671121 CNV deletion 23128226

Additional Variant Information for SNORA61 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA61

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA61 Gene

Disorders for SNORA61 Gene

Additional Disease Information for SNORA61

No disorders were found for SNORA61 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA61 Gene

Publications for SNORA61 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA61 Gene

Sources for SNORA61 Gene

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