Aliases for SNORA60 Gene

Subcategory (RNA class) for SNORA60 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORA60 Gene

  • Small Nucleolar RNA, H/ACA Box 60 2 3 5
  • SNORA60 2 5 170
  • ACA60 2 3
  • ACA60 SnoRNA 3
  • SNODB721 177
  • SNODB181 177
  • RF00056 168

External Ids for SNORA60 Gene

Previous GeneCards Identifiers for SNORA60 Gene

  • GC20P036516
  • GC20P036519
  • GC20P036522
  • GC20P036525
  • GC20P036528
  • GC20P037078
  • GC20P033813

Summaries for SNORA60 Gene

GeneCards Summary for SNORA60 Gene

SNORA60 (Small Nucleolar RNA, H/ACA Box 60) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA60 Gene

  • Small nucleolar RNA SNORA71

Additional gene information for SNORA60 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA60 Gene

Genomics for SNORA60 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA60 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA60 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA60 gene promoter:
  • COMP1
  • Elk-1
  • GR
  • GR-alpha
  • GR-beta
  • HSF1 (long)
  • HSF1short
  • POU3F2
  • RORalpha2

Genomic Locations for SNORA60 Gene

Genomic Locations for SNORA60 Gene
chr20:38,449,369-38,449,504
(GRCh38/hg38)
Size:
136 bases
Orientation:
Plus strand
chr20:37,078,012-37,078,147
(GRCh37/hg19)
Size:
136 bases
Orientation:
Plus strand

Genomic View for SNORA60 Gene

Genes around SNORA60 on UCSC Golden Path with GeneCards custom track
SNORA60 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA60 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA60 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA60 Gene

Proteins for SNORA60 Gene

Post-translational modifications for SNORA60 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA60 Gene

Domains & Families for SNORA60 Gene

Gene Families for SNORA60 Gene

genes like me logo Genes that share domains with SNORA60: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA60 Gene

Function for SNORA60 Gene

Phenotypes From GWAS Catalog for SNORA60 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA60 Gene

Localization for SNORA60 Gene

Gene Ontology (GO) - Cellular Components for SNORA60 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA60: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA60 Gene

Pathways & Interactions for SNORA60 Gene

PathCards logo

SuperPathways for SNORA60 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA60 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA60: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA60 Gene

Drugs & Compounds for SNORA60 Gene

No Compound Related Data Available

Transcripts for SNORA60 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA60 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000468B49_9606 snoRNA 136 5

HGNC: 32654,

RefSeq: NR_002986,

snoDB: SNODB181,

snOPY: Homo_sapiens300490,

ENA: AJ609469.1:1..136:ncRNA,

URS00006A1082_9606 snoRNA 134 3

Ensembl: ENST00000362396 (view in UCSC) ,

Rfam: RF00056,

snoDB: SNODB721,

SNORA60 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA60 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA60 Gene

No ASD Table

Relevant External Links for SNORA60 Gene

GeneLoc Exon Structure for
SNORA60

Expression for SNORA60 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA60 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA60

SOURCE GeneReport for Unigene cluster for SNORA60 Gene:

Hs.706159
genes like me logo Genes that share expression patterns with SNORA60: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA60 Gene

Orthologs for SNORA60 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA60 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA71 31
  • 100 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA71 31
  • 89 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA71 31
  • 85 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm25129 31
  • 85 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORA71 31
  • 75 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 31
  • 75 (a)
OneToMany
Chicken
(Gallus gallus)
Aves SNORA71 31
  • 70 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA71 31
  • 71 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA71 31 31
  • 66 (a)
ManyToMany
Species where no ortholog for SNORA60 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA60 Gene

ENSEMBL:
Gene Tree for SNORA60 (if available)
TreeFam:
Gene Tree for SNORA60 (if available)

Paralogs for SNORA60 Gene

No data available for Paralogs for SNORA60 Gene

Variants for SNORA60 Gene

Additional dbSNP identifiers (rs#s) for SNORA60 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA60 Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354

Additional Variant Information for SNORA60 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA60

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA60 Gene

Disorders for SNORA60 Gene

Additional Disease Information for SNORA60

No disorders were found for SNORA60 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA60 Gene

Publications for SNORA60 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for SNORA60 Gene

Sources for SNORA60 Gene