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Aliases for SNORA5B Gene

Subcategory (RNA class) for SNORA5B Gene


Quality Score for this RNA gene is


Aliases for SNORA5B Gene

  • Small Nucleolar RNA, H/ACA Box 5B 2 3 5
  • ACA5b 3

External Ids for SNORA5B Gene

ORGUL Members for SNORA5B Gene

Previous GeneCards Identifiers for SNORA5B Gene

  • GC07M045112
  • GC07M045145
  • GC07M045029
  • GC07M045109
  • GC07M045116
  • GC07M045123
  • GC07M045127
  • GC07M045131
  • GC07M045135
  • GC07M045140

Summaries for SNORA5B Gene

GeneCards Summary for SNORA5B Gene

SNORA5B (Small Nucleolar RNA, H/ACA Box 5B) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORA5B Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA5: ACA5 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1].

Additional gene information for SNORA5B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA5B Gene

Genomics for SNORA5B Gene

GeneHancer (GH) Regulatory Elements for SNORA5B Gene

Promoters and enhancers for SNORA5B Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I044845 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 32 +258.5 258515 4.2 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC GLIS1 H2AFV LINC01952 CICP20 DDX56 SNORA5C POLM SNORA5B ENSG00000228434 SPDYE1 TMED4
GH07I044121 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 29.3 +983.1 983059 3.4 HDGF PKNOX1 CLOCK MLX ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF213 POLD2 POLM TMED4 SPDYE1 SNORA5B ENSG00000228434 DDX56 SNORA5C TBRG4 TUBG1P
GH07I044795 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 21.1 +308.7 308658 4.1 CLOCK ZFP64 DMAP1 IRF4 YY1 ZNF213 ZNF143 ZNF548 SP3 NFYC PPIA GC07P044796 GC07P044797 LOC105375259 SEPT7P2 SNORA5C POLM DDX56 SNORA5B ENSG00000228434
GH07I044628 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 19.3 +470.9 470895 13.6 HDGF PKNOX1 SMAD1 FEZF1 IRF4 YY1 POLR2B ZNF766 ZNF143 FOS DDX56 OGDH H2AFV SNORA5C PURB SNORA5B NACAD NUDCD3 TMED4 ENSG00000228434
GH07I044997 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.3 +105.9 105870 4.5 HDGF PKNOX1 ARNT ARID4B SIN3A YY1 POLR2B ZNF143 SP3 SP5 CCM2 LOC102723334 SNORA5C POLM ENSG00000260997 DDX56 SNORA5A SNORA5B ENSG00000228434 SNHG15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA5B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA5B gene promoter:

Genomic Locations for SNORA5B Gene

Genomic Locations for SNORA5B Gene
132 bases
Minus strand

Genomic View for SNORA5B Gene

Genes around SNORA5B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA5B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA5B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA5B Gene

ORGUL Member Location for SNORA5B Gene

ORGUL Member Location for SNORA5B gene

Proteins for SNORA5B Gene

Post-translational modifications for SNORA5B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA5B Gene

Domains & Families for SNORA5B Gene

Gene Families for SNORA5B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA5B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA5B Gene

Function for SNORA5B Gene

Phenotypes From GWAS Catalog for SNORA5B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA5B Gene

Localization for SNORA5B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA5B Gene

Pathways & Interactions for SNORA5B Gene

SuperPathways for SNORA5B Gene

No Data Available

Interacting Proteins for SNORA5B Gene

Gene Ontology (GO) - Biological Process for SNORA5B Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA5B Gene

Drugs & Compounds for SNORA5B Gene

No Compound Related Data Available

Transcripts for SNORA5B Gene

mRNA/cDNA for SNORA5B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA5B Gene

No ASD Table

Relevant External Links for SNORA5B Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA5B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA5B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA5B Gene:


SOURCE GeneReport for Unigene cluster for SNORA5B Gene:

genes like me logo Genes that share expression patterns with SNORA5B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA5B Gene

Orthologs for SNORA5B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA5B Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA5 34
  • 98 (a)
(Monodelphis domestica)
Mammalia SNORA5 34
  • 75 (a)
(Mus musculus)
Mammalia Gm23346 34
  • 68 (a)
(Bos Taurus)
Mammalia SNORA5 34
  • 65 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA5 34
  • 64 (a)
(Gallus gallus)
Aves SNORA5 34
  • 56 (a)
(Anolis carolinensis)
Reptilia SNORA5 34
  • 59 (a)
(Danio rerio)
Actinopterygii SNORA5 34 34 34 34
  • 61 (a)
Species where no ortholog for SNORA5B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA5B Gene

Gene Tree for SNORA5B (if available)
Gene Tree for SNORA5B (if available)

Paralogs for SNORA5B Gene

No data available for Paralogs for SNORA5B Gene

Variants for SNORA5B Gene

Sequence variations from dbSNP and Humsavar for SNORA5B Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000692262 -- 45,106,011(-) A/G non_coding_transcript_variant
rs1001520861 -- 45,105,646(-) C/T downstream_transcript_variant
rs1003254103 -- 45,106,340(-) C/T upstream_transcript_variant
rs1004852002 -- 45,106,943(-) T/C upstream_transcript_variant
rs1007702226 -- 45,107,969(-) T/C upstream_transcript_variant

Additional Variant Information for SNORA5B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA5B Gene

Disorders for SNORA5B Gene

Additional Disease Information for SNORA5B

No disorders were found for SNORA5B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA5B Gene

Publications for SNORA5B Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for SNORA5B Gene

Sources for SNORA5B Gene

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