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Aliases for SNORA5A Gene

Subcategory (RNA class) for SNORA5A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA5A Gene

  • Small Nucleolar RNA, H/ACA Box 5A 2 3 5
  • ACA5A/B/C 3
  • ACA5 3

External Ids for SNORA5A Gene

Previous GeneCards Identifiers for SNORA5A Gene

  • GC07M045110
  • GC07M045143
  • GC07M045027
  • GC07M045105
  • GC07M045107
  • GC07M045113
  • GC07M045119
  • GC07M045124
  • GC07M045128
  • GC07M045132

Summaries for SNORA5A Gene

GeneCards Summary for SNORA5A Gene

SNORA5A (Small Nucleolar RNA, H/ACA Box 5A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA5A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA5A Gene

Genomics for SNORA5A Gene

GeneHancer (GH) Regulatory Elements for SNORA5A Gene

Promoters and enhancers for SNORA5A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I044845 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 20.1 +256.9 256898 4.2 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC GLIS1 H2AFV LINC01952 CICP20 DDX56 SNORA5C POLM SNORA5B ENSG00000228434 SPDYE1 TMED4
GH07I044997 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.6 +104.3 104253 4.5 HDGF PKNOX1 ARNT ARID4B SIN3A YY1 POLR2B ZNF143 SP3 SP5 CCM2 LOC102723334 SNORA5C POLM ENSG00000260997 DDX56 SNORA5A SNORA5B ENSG00000228434 SNHG15
GH07I044795 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.5 +307.0 307041 4.1 CLOCK ZFP64 DMAP1 IRF4 YY1 ZNF213 ZNF143 ZNF548 SP3 NFYC PPIA GC07P044796 GC07P044797 LOC105375259 SEPT7P2 SNORA5C POLM DDX56 SNORA5B ENSG00000228434
GH07I044121 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.4 +981.4 981442 3.4 HDGF PKNOX1 CLOCK MLX ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF213 POLD2 POLM TMED4 SPDYE1 SNORA5B ENSG00000228434 DDX56 SNORA5C TBRG4 TUBG1P
GH07I044184 Enhancer 1 ENCODE dbSUPER 21.8 +919.4 919445 1.8 YBX3 KLF17 SIN3A GLI4 RFX5 ZNF366 SCRT2 RCOR1 FOS ZNF645 POLM SNORA5C DDX56 SNORA5B ENSG00000228434 TMED4 SNORA5A SPDYE1 SNHG15 YKT6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA5A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA5A gene promoter:

Genomic Locations for SNORA5A Gene

Genomic Locations for SNORA5A Gene
chr7:45,104,349-45,104,482
(GRCh38/hg38)
Size:
134 bases
Orientation:
Minus strand
chr7:45,143,948-45,144,081
(GRCh37/hg19)

Genomic View for SNORA5A Gene

Genes around SNORA5A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA5A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA5A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA5A Gene

Proteins for SNORA5A Gene

Post-translational modifications for SNORA5A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA5A Gene

Domains & Families for SNORA5A Gene

Gene Families for SNORA5A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA5A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA5A Gene

Function for SNORA5A Gene

Phenotypes From GWAS Catalog for SNORA5A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA5A Gene

Localization for SNORA5A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA5A Gene

Pathways & Interactions for SNORA5A Gene

SuperPathways for SNORA5A Gene

No Data Available

Interacting Proteins for SNORA5A Gene

Gene Ontology (GO) - Biological Process for SNORA5A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA5A Gene

Drugs & Compounds for SNORA5A Gene

No Compound Related Data Available

Transcripts for SNORA5A Gene

mRNA/cDNA for SNORA5A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA5A Gene

No ASD Table

Relevant External Links for SNORA5A Gene

GeneLoc Exon Structure for
SNORA5A
ECgene alternative splicing isoforms for
SNORA5A

Expression for SNORA5A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA5A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA5A Gene:

SNORA5A

SOURCE GeneReport for Unigene cluster for SNORA5A Gene:

Hs.689711
genes like me logo Genes that share expression patterns with SNORA5A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA5A Gene

Orthologs for SNORA5A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA5A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA5 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA5 34
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24313 34
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA5 34
  • 80 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORA5 34
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA5 34
  • 66 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA5 34
  • 61 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORA5 34
  • 67 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA5 34 34 34 34
  • 60 (a)
ManyToMany
Species where no ortholog for SNORA5A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA5A Gene

ENSEMBL:
Gene Tree for SNORA5A (if available)
TreeFam:
Gene Tree for SNORA5A (if available)

Paralogs for SNORA5A Gene

No data available for Paralogs for SNORA5A Gene

Variants for SNORA5A Gene

Sequence variations from dbSNP and Humsavar for SNORA5A Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000253966 -- 45,105,067(-) A/G upstream_transcript_variant
rs1000692262 -- 45,106,011(-) A/G upstream_transcript_variant
rs1001520861 -- 45,105,646(-) C/T upstream_transcript_variant
rs1003254103 -- 45,106,340(-) C/T upstream_transcript_variant
rs1006856058 -- 45,104,542(-) G/A upstream_transcript_variant

Additional Variant Information for SNORA5A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA5A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA5A Gene

Disorders for SNORA5A Gene

Additional Disease Information for SNORA5A

No disorders were found for SNORA5A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA5A Gene

Publications for SNORA5A Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA5A Gene

Sources for SNORA5A Gene

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