Aliases for SNORA59B Gene

Subcategory (RNA class) for SNORA59B Gene

snoRNA

Number of RNA Genes sources:

4 / 14

Aliases for SNORA59B Gene

  • Small Nucleolar RNA, H/ACA Box 59B 2 3 5
  • Lnc-ALDH3A2-2 168
  • NONHSAG021119 92
  • SNORA59A 2
  • SNORA59B 2
  • RF01293 172
  • ACA59 3

External Ids for SNORA59B Gene

Previous GeneCards Identifiers for SNORA59B Gene

  • GC17P019402
  • GC17P019477
  • GC17P018840
  • GC17P019559
  • GC17P019592
  • GC17P019683
  • GC17P019695
  • GC17P019702
  • GC17P019608
  • GC17P019621
  • GC17P019630
  • GC17P019637
  • GC17P019645
  • GC17P019652
  • GC17P019663
  • GC17P019672

Summaries for SNORA59B Gene

GeneCards Summary for SNORA59B Gene

SNORA59B (Small Nucleolar RNA, H/ACA Box 59B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA59B Gene

  • Small nucleolar RNA ACA59

Additional gene information for SNORA59B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA59B Gene

Genomics for SNORA59B Gene

GeneHancer (GH) Regulatory Elements for SNORA59B Gene

Promoters and enhancers for SNORA59B Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA59B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA59B gene promoter:
  • ARP-1
  • ATF-2
  • c-Myc
  • C/EBPalpha
  • C/EBPbeta
  • CRE-BP1
  • CREB
  • Ik-2
  • Max1
  • Pax-6

Genomic Locations for SNORA59B Gene

Genomic Locations for SNORA59B Gene
chr17:19,557,211-19,557,911
(GRCh38/hg38)
Size:
701 bases
Orientation:
Plus strand
chr17:19,460,524-19,461,224
(GRCh37/hg19)
Size:
701 bases
Orientation:
Plus strand

Genomic View for SNORA59B Gene

Genes around SNORA59B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA59B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA59B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA59B Gene

Proteins for SNORA59B Gene

Post-translational modifications for SNORA59B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA59B Gene

Domains & Families for SNORA59B Gene

Gene Families for SNORA59B Gene

genes like me logo Genes that share domains with SNORA59B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA59B Gene

Function for SNORA59B Gene

Phenotypes From GWAS Catalog for SNORA59B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA59B Gene

Localization for SNORA59B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA59B Gene

Pathways & Interactions for SNORA59B Gene

PathCards logo

SuperPathways for SNORA59B Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORA59B Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA59B Gene

Drugs & Compounds for SNORA59B Gene

No Compound Related Data Available

Transcripts for SNORA59B Gene

mRNA/cDNA for SNORA59B Gene

2 RNACentral transcripts :
2 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 ENA transcripts :
1 LNCipedia transcripts :
1 Rfam transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA59B Gene

No ASD Table

Relevant External Links for SNORA59B Gene

GeneLoc Exon Structure for
SNORA59B

Expression for SNORA59B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA59B Gene

mRNA differential expression in normal tissues according to GTEx for SNORA59B Gene

This gene is overexpressed in Adrenal Gland (x9.7) and Liver (x8.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA59B

genes like me logo Genes that share expression patterns with SNORA59B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA59B Gene

Orthologs for SNORA59B Gene

Evolution for SNORA59B Gene

ENSEMBL:
Gene Tree for SNORA59B (if available)
TreeFam:
Gene Tree for SNORA59B (if available)

No data available for Orthologs for SNORA59B Gene

Paralogs for SNORA59B Gene

No data available for Paralogs for SNORA59B Gene

Variants for SNORA59B Gene

Additional dbSNP identifiers (rs#s) for SNORA59B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA59B Gene

Variant ID Type Subtype PubMed ID
esv3582561 CNV loss 25503493
nsv1061317 CNV gain 25217958
nsv1061408 CNV gain 25217958
nsv428337 CNV loss 18775914
nsv517848 CNV gain 19592680

Additional Variant Information for SNORA59B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA59B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA59B Gene

Disorders for SNORA59B Gene

Additional Disease Information for SNORA59B

No disorders were found for SNORA59B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA59B Gene

Publications for SNORA59B Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 54
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 54
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORA59B Gene

Sources for SNORA59B Gene