Aliases for SNORA59A Gene

Subcategory (RNA class) for SNORA59A Gene

snoRNA

Number of RNA Genes sources:

2 / 14

Aliases for SNORA59A Gene

  • Small Nucleolar RNA, H/ACA Box 59A 2 3 5
  • SNORA59A 2
  • SNORA59B 2
  • RF01293 172
  • ACA59 3

External Ids for SNORA59A Gene

Previous GeneCards Identifiers for SNORA59A Gene

  • GC01U901439
  • GC17P019403
  • GC17P019475
  • GC01P012567
  • GC01P011720

Summaries for SNORA59A Gene

GeneCards Summary for SNORA59A Gene

SNORA59A (Small Nucleolar RNA, H/ACA Box 59A) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORA59A include Interstitial Keratitis and Cogan Syndrome.

Rfam classification for SNORA59A Gene

  • Small nucleolar RNA ACA59

Additional gene information for SNORA59A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA59A Gene

Genomics for SNORA59A Gene

GeneHancer (GH) Regulatory Elements for SNORA59A Gene

Promoters and enhancers for SNORA59A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA59A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA59A gene promoter:
  • AREB6
  • E47
  • GATA-6
  • HSF1 (long)
  • HSF1short
  • STAT1
  • STAT1alpha
  • STAT1beta
  • STAT2
  • Tal-1

Genomic Locations for SNORA59A Gene

Genomic Locations for SNORA59A Gene
chr1:12,507,246-12,507,397
(GRCh38/hg38)
Size:
152 bases
Orientation:
Plus strand
chr1:12,567,300-12,567,451
(GRCh37/hg19)
Size:
152 bases
Orientation:
Plus strand

Genomic View for SNORA59A Gene

Genes around SNORA59A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA59A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA59A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA59A Gene

Proteins for SNORA59A Gene

Post-translational modifications for SNORA59A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA59A Gene

Domains & Families for SNORA59A Gene

Gene Families for SNORA59A Gene

genes like me logo Genes that share domains with SNORA59A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA59A Gene

Function for SNORA59A Gene

Phenotypes From GWAS Catalog for SNORA59A Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA59A Gene

Localization for SNORA59A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA59A Gene

Pathways & Interactions for SNORA59A Gene

PathCards logo

SuperPathways for SNORA59A Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORA59A Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA59A Gene

Drugs & Compounds for SNORA59A Gene

No Compound Related Data Available

Transcripts for SNORA59A Gene

mRNA/cDNA for SNORA59A Gene

1 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 ENA transcripts :
1 Rfam transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA59A Gene

No ASD Table

Relevant External Links for SNORA59A Gene

GeneLoc Exon Structure for
SNORA59A

Expression for SNORA59A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA59A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA59A

SOURCE GeneReport for Unigene cluster for SNORA59A Gene:

Hs.658450
genes like me logo Genes that share expression patterns with SNORA59A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA59A Gene

Orthologs for SNORA59A Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA59A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ACA59 31
  • 100 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ACA59 31 31 31 31
  • 62 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia ACA59 31
  • 62 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia ACA59 31
  • 57 (a)
OneToOne
Species where no ortholog for SNORA59A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA59A Gene

ENSEMBL:
Gene Tree for SNORA59A (if available)
TreeFam:
Gene Tree for SNORA59A (if available)

Paralogs for SNORA59A Gene

No data available for Paralogs for SNORA59A Gene

Variants for SNORA59A Gene

Additional dbSNP identifiers (rs#s) for SNORA59A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA59A Gene

Variant ID Type Subtype PubMed ID
esv3582561 CNV loss 25503493
nsv1061317 CNV gain 25217958
nsv1061408 CNV gain 25217958
nsv428337 CNV loss 18775914
nsv517848 CNV gain 19592680

Additional Variant Information for SNORA59A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA59A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA59A Gene

Disorders for SNORA59A Gene

MalaCards: The human disease database

(4) MalaCards diseases for SNORA59A Gene - From: DISEASES

Disorder Aliases PubMed IDs
interstitial keratitis
cogan syndrome
  • cogan's syndrome
aortitis
mediastinitis
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORA59A

genes like me logo Genes that share disorders with SNORA59A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA59A Gene

Publications for SNORA59A Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 54
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 54
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54
  4. Lineage-specific gene duplication and loss in human and great ape evolution. (PMID: 15252450) Fortna A … Sikela JM (PLoS biology 2004) 3 54

Products for SNORA59A Gene

Sources for SNORA59A Gene