Aliases for SNORA58B Gene

Subcategory (RNA class) for SNORA58B Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORA58B Gene

  • Small Nucleolar RNA, H/ACA Box 58B 2 3 5
  • SNORA58B 5
  • SNODB488 177
  • RF00418 168
  • SNORA58 170

External Ids for SNORA58B Gene

Previous GeneCards Identifiers for SNORA58B Gene

  • GC00U936715
  • GC01U905791

Summaries for SNORA58B Gene

GeneCards Summary for SNORA58B Gene

SNORA58B (Small Nucleolar RNA, H/ACA Box 58B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA58B Gene

  • Small nucleolar RNA SNORA58

Additional gene information for SNORA58B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA58B Gene

Genomics for SNORA58B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA58B Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA58B on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORA58B Gene

Genomic Locations for SNORA58B Gene
chr1:154,259,727-154,259,862
(GRCh38/hg38)
Size:
136 bases
Orientation:
Plus strand
chr1:154,232,203-154,232,338
(GRCh37/hg19)
Size:
136 bases
Orientation:
Plus strand

Genomic View for SNORA58B Gene

Genes around SNORA58B on UCSC Golden Path with GeneCards custom track
SNORA58B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA58B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA58B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA58B Gene

Proteins for SNORA58B Gene

Post-translational modifications for SNORA58B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA58B Gene

Domains & Families for SNORA58B Gene

Gene Families for SNORA58B Gene

genes like me logo Genes that share domains with SNORA58B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA58B Gene

Function for SNORA58B Gene

Phenotypes From GWAS Catalog for SNORA58B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA58B Gene

Localization for SNORA58B Gene

Gene Ontology (GO) - Cellular Components for SNORA58B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA58B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA58B Gene

Pathways & Interactions for SNORA58B Gene

PathCards logo

SuperPathways for SNORA58B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA58B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA58B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA58B Gene

Drugs & Compounds for SNORA58B Gene

No Compound Related Data Available

Transcripts for SNORA58B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA58B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000065E84A_9606 snoRNA 136 6

HGNC: 52208,

RefSeq: NR_145714,

Ensembl: ENST00000364259 (view in UCSC) ,

Rfam: RF00418,

snoDB: SNODB488,

snOPY: Homo_sapiens300671,

SNORA58B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA58B Gene

No ASD Table

Relevant External Links for SNORA58B Gene

GeneLoc Exon Structure for
SNORA58B

No data available for mRNA/cDNA for SNORA58B Gene

Expression for SNORA58B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA58B Gene

Orthologs for SNORA58B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA58B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA58 31
  • 100 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA58 31
  • 86 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA58 31
  • 84 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORA58 31
  • 72 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm24608 31
  • 71 (a)
OneToOne
Chicken
(Gallus gallus)
Aves SNORA58 31
  • 66 (a)
OneToOne
Species where no ortholog for SNORA58B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORA58B Gene

ENSEMBL:
Gene Tree for SNORA58B (if available)
TreeFam:
Gene Tree for SNORA58B (if available)

Paralogs for SNORA58B Gene

No data available for Paralogs for SNORA58B Gene

Variants for SNORA58B Gene

Additional dbSNP identifiers (rs#s) for SNORA58B Gene

Additional Variant Information for SNORA58B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA58B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA58B Gene

Disorders for SNORA58B Gene

Additional Disease Information for SNORA58B

No disorders were found for SNORA58B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA58B Gene

Publications for SNORA58B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3

Products for SNORA58B Gene

Sources for SNORA58B Gene