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Aliases for SNORA57 Gene
Data sources for SNORA57 Gene:
Subcategory (RNA class) for SNORA57 Gene
snoRNA
Aliases for SNORA57 Gene
- Small Nucleolar RNA, H/ACA Box 57 (HGNC, NCBI Entrez Gene, Ensembl)
- SNORA57 (Ensembl, snOPY)
- U99 (HGNC, NCBI Entrez Gene)
- SNODB35 (snoDB)
- RF00191 (Rfam)
External Ids for SNORA57 Gene
- HGNC: 32651
- NCBI Entrez Gene: 692158
- Ensembl: ENSG00000206597
Previous GeneCards Identifiers for SNORA57 Gene
- GC11U900715
- GC11P062194
- GC11P062432
- GC11P058762
- GC11P062666
- GC11P062675
- GC11P062679
- GC11P062681
- GC11P062686
- GC11P062667
- GC11P062669
- GC11P062673
- GC11P062691
Summaries for SNORA57 Gene
GeneCards Summary for SNORA57 Gene
SNORA57 (Small Nucleolar RNA, H/ACA Box 57) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORA57 Gene
-
Small nucleolar RNA SNORA57
Additional gene information for SNORA57 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA57 Gene
Genomics for SNORA57 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORA57 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORA57 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNORA57 gene promoter:
-
- AP-4
- C/EBPalpha
- LUN-1
- Max1
- NF-1
- POU6F1 (c2)
- PPAR-alpha
- RORalpha1
- Sp1
- TBP
Genomic Locations for SNORA57 Gene
Latest Assembly
- chr11:62,665,422-62,665,570
- (GRCh38/hg38)
- Size:
- 149 bases
- Orientation:
- Plus strand
Previous Assembly
- chr11:62,432,894-62,433,042
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 149 bases
- Orientation:
- Plus strand
- chr11:62,432,894-62,433,042
- (GRCh37/hg19 by Ensembl)
- Size:
- 149 bases
- Orientation:
- Plus strand
Genomic View for SNORA57 Gene
Genes around SNORA57 on UCSC Golden Path with GeneCards custom track
SNORA57 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q12.2 by HGNC
- 11q12.3 by Entrez Gene
- 11q12.3 by Ensembl
SNORA57 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORA57 Gene
Proteins for SNORA57 Gene
Post-translational modifications for SNORA57 Gene
No Post-translational modifications
No data available for DME Specific Peptides for SNORA57 Gene
Domains & Families for SNORA57 Gene
Gene Families for SNORA57 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA57 Gene
Function for SNORA57 Gene
Phenotypes From GWAS Catalog for SNORA57 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORA57 - Starting at $85 >
- * SNORA57 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SNORA57 - Starting at $45 >
- * SNORA57 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA57 Gene
Localization for SNORA57 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA57 Gene
Pathways & Interactions for SNORA57 Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA57 Gene
Transcripts for SNORA57 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA57 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00000CC074_9606 | snoRNA | 149 | 6 |
RefSeq: NR_004390, Ensembl: ENST00000383870 (view in UCSC) , Rfam: RF00191, snoDB: SNODB35, snOPY: Homo_sapiens300739, ENA: AY349600.1:1..149:ncRNA, |
| URS0001BC890E_9606 | snoRNA | 149 | 1 |
Rfam: RF00191, |
SNORA57 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORA57 - Starting at $85 >
- * SNORA57 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SNORA57 - Starting at $45 >
- * SNORA57 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Relevant External Links for SNORA57 Gene
- GeneLoc Exon Structure for
- SNORA57
No data available for mRNA/cDNA for SNORA57 Gene
Expression for SNORA57 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA57
SOURCE GeneReport for Unigene cluster for SNORA57 Gene:
Hs.687390Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA57 Gene
Orthologs for SNORA57 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SNORA57 31 |
|
OneToOne | |
| Mouse (Mus musculus) |
Mammalia | Gm25822 31 |
|
OneToMany | |
| Gm26132 31 |
|
OneToMany | |||
| Oppossum (Monodelphis domestica) |
Mammalia | SNORA57 31 |
|
OneToMany | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | SNORA57 31 31 |
|
ManyToMany | |
| Cow (Bos Taurus) |
Mammalia | SNORA57 31 |
|
ManyToMany | |
| Lizard (Anolis carolinensis) |
Reptilia | SNORA57 31 |
|
OneToMany | |
| Zebrafish (Danio rerio) |
Actinopterygii | SNORA57 31 31 31 |
|
ManyToMany |
- Species where no ortholog for SNORA57 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- Dog (Canis familiaris)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
Paralogs for SNORA57 Gene
No data available for Paralogs for SNORA57 Gene
Variants for SNORA57 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for SNORA57 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORA57
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA57 Gene
Disorders for SNORA57 Gene
Additional Disease Information for SNORA57
No disorders were found for SNORA57 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA57 Gene
Publications for SNORA57 Gene
- snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
- Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
- Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L … Tomasson MH (The Journal of clinical investigation 2012) 3
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
- Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 3
ExternalLinks
Products for SNORA57 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORA57
- Origene Custom Protein Services for SNORA57
- Browse OriGene Inhibitory RNA Products For SNORA57
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORA57
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORA57
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORA57
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORA57
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORA57
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORA57
Sources for SNORA57 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB