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Aliases for SNORA56 Gene

Subcategory (RNA class) for SNORA56 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA56 Gene

  • Small Nucleolar RNA, H/ACA Box 56 2 3 5
  • ACA56 SnoRNA 3
  • ACA56 3

External Ids for SNORA56 Gene

Previous GeneCards Identifiers for SNORA56 Gene

  • GC0XP153656
  • GC0XP154003

Summaries for SNORA56 Gene

Entrez Gene Summary for SNORA56 Gene

  • Biosynthesis of stable cellular RNAs such as tRNAs, rRNAs, snRNAs, and snoRNAs is aided by covalent nucleotide modification after transcription. The modified nucleotides are involved in correct RNA folding, establishment of correct RNA-RNA and RNA-protein interactions, and in the correct function of mature RNAs. The RNA encoded by this gene is thought to mediate the pseudouridylation of residue U1664 of 28S rRNA. [provided by RefSeq, Feb 2009]

GeneCards Summary for SNORA56 Gene

SNORA56 (Small Nucleolar RNA, H/ACA Box 56) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA56 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA56 Gene

Genomics for SNORA56 Gene

GeneHancer (GH) Regulatory Elements for SNORA56 Gene

Promoters and enhancers for SNORA56 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI154396 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 34.6 -375.5 -375518 6.2 HNRNPUL1 PKNOX1 CLOCK SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 SNORA70 GC0XP154401 GC0XP154402 ENSG00000280195 RPL10 PLXNA3 HCFC1 DKC1 SNORA56 EMD
GH0XI154723 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 43.5 -43.6 -43573 16 FOXA2 ZFP64 IRF4 YY1 ZNF213 FOS RUNX3 RXRA JUNB ZC3H11A DKC1 SNORA70 HCFC1 SNORA56 F8A1 EMD GAB3 PLXNA3 F8A2 SLC10A3
GH0XI154796 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 24.7 +26.4 26403 10.1 HDGF PKNOX1 SMAD1 FOXA2 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 MPP1 F8A1 DKC1 SNORA56 F8A2 SNORA70 SNORA36A IKBKG TMLHE HCFC1
GH0XI153965 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 21.9 -804.5 -804482 10 HDGF PKNOX1 CLOCK FOXA2 ARNT ZFP64 SIN3A FEZF1 DMAP1 ZNF2 TMEM187 HCFC1 HCFC1-AS1 SNORA70 SLC10A3 SNORA56 DKC1 EMD FAM3A ABCD1
GH0XI153900 Enhancer 1.4 FANTOM5 Ensembl ENCODE 25.1 -872.5 -872493 4.2 HDGF GLI4 TCF12 ZNF766 GLIS2 GATA2 ZNF143 FOS REST ATF4 AVPR2 HCFC1 SNORA70 DKC1 PLXNA3 TMEM187 SNORA56 EMD LOC105373383 SLC10A3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA56 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA56 gene promoter:

Genomic Locations for SNORA56 Gene

Genomic Locations for SNORA56 Gene
chrX:154,774,998-154,775,126
(GRCh38/hg38)
Size:
129 bases
Orientation:
Plus strand
chrX:154,003,273-154,003,401
(GRCh37/hg19)

Genomic View for SNORA56 Gene

Genes around SNORA56 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA56 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA56 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA56 Gene

Proteins for SNORA56 Gene

Post-translational modifications for SNORA56 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA56 Gene

Domains & Families for SNORA56 Gene

Gene Families for SNORA56 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA56: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA56 Gene

Function for SNORA56 Gene

Phenotypes From GWAS Catalog for SNORA56 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA56 Gene

Localization for SNORA56 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA56 Gene

Pathways & Interactions for SNORA56 Gene

SuperPathways for SNORA56 Gene

No Data Available

Interacting Proteins for SNORA56 Gene

Gene Ontology (GO) - Biological Process for SNORA56 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA56 Gene

Drugs & Compounds for SNORA56 Gene

No Compound Related Data Available

Transcripts for SNORA56 Gene

mRNA/cDNA for SNORA56 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA56 Gene

No ASD Table

Relevant External Links for SNORA56 Gene

GeneLoc Exon Structure for
SNORA56
ECgene alternative splicing isoforms for
SNORA56

Expression for SNORA56 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA56 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA56 Gene:

SNORA56

SOURCE GeneReport for Unigene cluster for SNORA56 Gene:

Hs.745526
genes like me logo Genes that share expression patterns with SNORA56: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA56 Gene

Orthologs for SNORA56 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA56 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA56 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA56 34
  • 85 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA56 34
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA56 34
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA56 34 34 34 34
  • 74 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA56 34
  • 52 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA56 34
  • 58 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA56 34
  • 56 (a)
OneToOne
Species where no ortholog for SNORA56 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA56 Gene

ENSEMBL:
Gene Tree for SNORA56 (if available)
TreeFam:
Gene Tree for SNORA56 (if available)

Paralogs for SNORA56 Gene

No data available for Paralogs for SNORA56 Gene

Variants for SNORA56 Gene

Sequence variations from dbSNP and Humsavar for SNORA56 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs121912288 pathogenic, Dyskeratosis congenita X-linked, Dyskeratosis congenita 154,773,152(+) C/T upstream_transcript_variant
rs121912289 pathogenic, Dyskeratosis congenita X-linked 154,774,672(+) C/T upstream_transcript_variant
rs121912295 pathogenic, Dyskeratosis congenita X-linked 154,774,651(+) G/A upstream_transcript_variant
rs121912298 pathogenic, Dyskeratosis congenita X-linked 154,773,144(+) G/A upstream_transcript_variant
rs121912299 pathogenic, Dyskeratosis congenita X-linked 154,774,650(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA56 Gene

Variant ID Type Subtype PubMed ID
esv33784 CNV gain+loss 17666407

Additional Variant Information for SNORA56 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA56

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA56 Gene

Disorders for SNORA56 Gene

Additional Disease Information for SNORA56

No disorders were found for SNORA56 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA56 Gene

Publications for SNORA56 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA56 Gene

Sources for SNORA56 Gene

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