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Aliases for SNORA55 Gene

Subcategory (RNA class) for SNORA55 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA55 Gene

  • Small Nucleolar RNA, H/ACA Box 55 2 3 5
  • ACA55 SnoRNA 3
  • ACA55 3

External Ids for SNORA55 Gene

Previous GeneCards Identifiers for SNORA55 Gene

  • GC01M039805
  • GC01M040033
  • GC01M038152

Summaries for SNORA55 Gene

GeneCards Summary for SNORA55 Gene

SNORA55 (Small Nucleolar RNA, H/ACA Box 55) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA55 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA55 Gene

Genomics for SNORA55 Gene

GeneHancer (GH) Regulatory Elements for SNORA55 Gene

Promoters and enhancers for SNORA55 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I039566 Enhancer 1 ENCODE dbSUPER 550.8 +0.5 498 1.7 MLX NFIB ARID4B RARA ETS1 YY1 CREM THAP11 SMAD5 RXRA GC01M039568 GC01M039569 LOC101929516 SNORA55 OXCT2 ENSG00000182109 OXCT2P1 PABPC4
GH01I039569 Enhancer 0.6 ENCODE dbSUPER 550.8 -1.8 -1842 0 PAF1 POLR2A GC01M039568 GC01M039569 SNORA55 LOC101929516 PABPC4
GH01I040256 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 9.9 -690.3 -690303 3.2 ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 ENSG00000259943 ZMPSTE24 PPIE PPIEL EXO5 TRIT1 RLF NFYC-AS1 NFYC LOC105378672
GH01I039391 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +171.3 171272 10.2 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A YY1 ZNF766 FOS DEK PPIEL PPIE LOC101929516 SNORA55 PABPC4 OXCT2P1 KIAA0754 MACF1 TRIT1 BMP8A
GH01I039539 Enhancer 1.1 FANTOM5 Ensembl ENCODE 12.9 +26.5 26473 2.3 CTCF ZNF335 ZNF316 ZSCAN5C HNF4A MAFK EMSY PABPC4 OXCT2P1 LOC101929516 SNORA55 OXCT2 MFSD2A ENSG00000182109 PIR37850 PPIEL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA55 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA55 gene promoter:

Genomic Locations for SNORA55 Gene

Genomic Locations for SNORA55 Gene
chr1:39,567,374-39,567,510
(GRCh38/hg38)
Size:
137 bases
Orientation:
Minus strand
chr1:40,033,046-40,033,182
(GRCh37/hg19)

Genomic View for SNORA55 Gene

Genes around SNORA55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA55 Gene

Proteins for SNORA55 Gene

Post-translational modifications for SNORA55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA55 Gene

Domains & Families for SNORA55 Gene

Gene Families for SNORA55 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA55: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA55 Gene

Function for SNORA55 Gene

Phenotypes From GWAS Catalog for SNORA55 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA55 Gene

Localization for SNORA55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA55 Gene

Pathways & Interactions for SNORA55 Gene

SuperPathways for SNORA55 Gene

No Data Available

Interacting Proteins for SNORA55 Gene

Gene Ontology (GO) - Biological Process for SNORA55 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA55 Gene

Drugs & Compounds for SNORA55 Gene

No Compound Related Data Available

Transcripts for SNORA55 Gene

mRNA/cDNA for SNORA55 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA55 Gene

Small nucleolar RNA, H/ACA box 55:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA55 Gene

No ASD Table

Relevant External Links for SNORA55 Gene

GeneLoc Exon Structure for
SNORA55
ECgene alternative splicing isoforms for
SNORA55

Expression for SNORA55 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA55 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA55 Gene:

SNORA55

SOURCE GeneReport for Unigene cluster for SNORA55 Gene:

Hs.676660
genes like me logo Genes that share expression patterns with SNORA55: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA55 Gene

Orthologs for SNORA55 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA55 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA55 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA55 34
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA55 34 34
  • 90 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm22889 34
  • 88 (a)
OneToMany
Gm24620 34
  • 85 (a)
OneToMany
Gm22154 34
  • 84 (a)
OneToMany
Gm25788 34
  • 84 (a)
OneToMany
Gm25370 34
  • 83 (a)
OneToMany
Gm23974 34
  • 81 (a)
OneToMany
Gm26048 34
  • 68 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA55 34
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA55 34
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA55 34 34 34
  • 82 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA55 34
  • 72 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA55 34 34
  • 60 (a)
OneToMany
Species where no ortholog for SNORA55 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA55 Gene

ENSEMBL:
Gene Tree for SNORA55 (if available)
TreeFam:
Gene Tree for SNORA55 (if available)

Paralogs for SNORA55 Gene

No data available for Paralogs for SNORA55 Gene

Variants for SNORA55 Gene

Sequence variations from dbSNP and Humsavar for SNORA55 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000820493 -- 39,569,261(-) G/A upstream_transcript_variant
rs1000850017 -- 39,569,059(-) C/G upstream_transcript_variant
rs1001423998 -- 39,569,188(-) G/A upstream_transcript_variant
rs1002052424 -- 39,568,613(-) C/G upstream_transcript_variant
rs1003449235 -- 39,567,068(-) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA55 Gene

Variant ID Type Subtype PubMed ID
nsv1116447 OTHER inversion 24896259
nsv7177 OTHER inversion 18451855
nsv829649 CNV loss 17160897

Additional Variant Information for SNORA55 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA55 Gene

Disorders for SNORA55 Gene

Additional Disease Information for SNORA55

No disorders were found for SNORA55 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA55 Gene

Publications for SNORA55 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Integrated analysis of the prostate cancer small-nucleolar transcriptome reveals SNORA55 as a driver of prostate cancer progression. (PMID: 26809501) Crea F … Helgason CD (Molecular oncology 2016) 3 58
  4. Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels. (PMID: 21300955) Dehghan A … Chasman DI (Circulation 2011) 44 58
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA55 Gene

Sources for SNORA55 Gene

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