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Aliases for SNORA52 Gene

Subcategory (RNA class) for SNORA52 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA52 Gene

  • Small Nucleolar RNA, H/ACA Box 52 2 3 5
  • ACA52 Small Nucleolar RNA 3
  • ACA52 SnoRNA 3
  • ACA52 3

External Ids for SNORA52 Gene

Previous GeneCards Identifiers for SNORA52 Gene

  • GC11P000803
  • GC11P000629

Summaries for SNORA52 Gene

GeneCards Summary for SNORA52 Gene

SNORA52 (Small Nucleolar RNA, H/ACA Box 52) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA52 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA52 Gene

Genomics for SNORA52 Gene

GeneHancer (GH) Regulatory Elements for SNORA52 Gene

Promoters and enhancers for SNORA52 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I000807 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 576.8 -0.7 -694 6.2 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 RPLP2 SNORA52 PIDD1 GC11P000812 GC11P000825 GC11P000813 ENSG00000255108 TMEM80 PHRF1 BET1L
GH11I000574 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 31.1 -233.3 -233300 6.9 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 PHRF1 TMEM80 SNORA52 ENSG00000255237 BET1L TSPAN4 PSMD13 RIC8A RPLP2 HRAS
GH11I000839 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 29.6 +32.1 32100 7.6 HDGF PKNOX1 CLOCK SMAD1 FOXA2 MLX ARID4B SIN3A DMAP1 SLC30A9 TSPAN4 POLR2L GC11M000841 CD151 SNORA52 RPLP2 TMEM80 PIDD1 RIC8A BET1L
GH11I000303 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 21.2 -499.1 -499066 17.8 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A YY1 POLR2B ZNF766 IFITM2 IFITM3 ENSG00000254910 IFITM1 PGGHG TMEM80 PHRF1 ENSG00000270030 BET1L RIC8A
GH11I001770 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 26.4 +960.3 960267 3.8 HDGF PKNOX1 CLOCK ATF1 ARNT NEUROD1 SIN3A ZBTB7B ARID2 FOS SNORA52 TSPAN4 PIDD1 IFITM10 TNNI2 ENSG00000255142 SYT8 KRTAP5-6 LOC100505570 FAM99B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA52 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA52 gene promoter:

Genomic Locations for SNORA52 Gene

Genomic Locations for SNORA52 Gene
chr11:811,681-811,814
(GRCh38/hg38)
Size:
134 bases
Orientation:
Plus strand
chr11:811,681-811,814
(GRCh37/hg19)

Genomic View for SNORA52 Gene

Genes around SNORA52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA52 Gene

Proteins for SNORA52 Gene

Post-translational modifications for SNORA52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA52 Gene

Domains & Families for SNORA52 Gene

Gene Families for SNORA52 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA52: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA52 Gene

Function for SNORA52 Gene

Phenotypes From GWAS Catalog for SNORA52 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA52 Gene

Localization for SNORA52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA52 Gene

Pathways & Interactions for SNORA52 Gene

SuperPathways for SNORA52 Gene

No Data Available

Interacting Proteins for SNORA52 Gene

Gene Ontology (GO) - Biological Process for SNORA52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA52 Gene

Drugs & Compounds for SNORA52 Gene

No Compound Related Data Available

Transcripts for SNORA52 Gene

mRNA/cDNA for SNORA52 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA52 Gene

No ASD Table

Relevant External Links for SNORA52 Gene

GeneLoc Exon Structure for
SNORA52
ECgene alternative splicing isoforms for
SNORA52

Expression for SNORA52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA52 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA52 Gene:

SNORA52

SOURCE GeneReport for Unigene cluster for SNORA52 Gene:

Hs.689713
genes like me logo Genes that share expression patterns with SNORA52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA52 Gene

Orthologs for SNORA52 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA52 34
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA52 34
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA52 34
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA52 34 34
  • 69 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snora52 34
  • 66 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA52 34
  • 64 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA52 34
  • 61 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA52 34
  • 51 (a)
OneToOne
Species where no ortholog for SNORA52 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA52 Gene

ENSEMBL:
Gene Tree for SNORA52 (if available)
TreeFam:
Gene Tree for SNORA52 (if available)

Paralogs for SNORA52 Gene

No data available for Paralogs for SNORA52 Gene

Variants for SNORA52 Gene

Sequence variations from dbSNP and Humsavar for SNORA52 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000118985 -- 811,147(+) A/G upstream_transcript_variant
rs1000267176 -- 809,693(+) G/A upstream_transcript_variant
rs1000272107 -- 811,007(+) C/A upstream_transcript_variant
rs1001051325 -- 810,435(+) A/C upstream_transcript_variant
rs1001497843 -- 810,207(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA52 Gene

Variant ID Type Subtype PubMed ID
dgv1013n100 CNV gain 25217958
dgv182e199 CNV deletion 23128226
esv2759794 CNV loss 17122850
nsv1040044 CNV gain+loss 25217958
nsv1159791 CNV deletion 26073780
nsv469923 CNV loss 18288195
nsv552871 CNV loss 21841781
nsv832044 CNV loss 17160897
nsv8759 CNV gain 18304495
nsv951272 CNV deletion 24416366

Additional Variant Information for SNORA52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA52 Gene

Disorders for SNORA52 Gene

Additional Disease Information for SNORA52

No disorders were found for SNORA52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA52 Gene

Publications for SNORA52 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  5. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 3 58

Products for SNORA52 Gene

Sources for SNORA52 Gene

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