Aliases for SNORA50C Gene

Data sources for SNORA50C Gene:

RNA type for SNORA50C Gene

snoRNA

Aliases for SNORA50C Gene

External Ids for SNORA50C Gene

Previous HGNC Symbols for SNORA50C Gene

  • SNORA76
  • SNORA76C

Previous GeneCards Identifiers for SNORA50C Gene

  • GC17P064167
  • GC17P064169
  • GC17P064165
  • GC17P064163
  • GC17P064151
  • GC17P064153
  • GC17P064155
  • GC17P064157
  • GC17P064159

Summaries for SNORA50C Gene

GeneCards Summary for SNORA50C Gene

SNORA50C (Small Nucleolar RNA, H/ACA Box 50C) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA50C Gene

  • Small nucleolar RNA SNORA76

Additional gene information for SNORA50C Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA50C Gene

Genomics for SNORA50C Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA50C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J064144 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.6 576 5 BCLAF1 SP1 NCOR1 MYC ZNF600 IKZF1 SSRP1 JUND ZNF592 ATF2 ENSG00000281311 HSALNG0118081 SNHG25 SNORA50C SNORD104 CEP95 POLG2 DDX42 SMARCD2 FTSJ3
GH17J064149 Enhancer 1.1 ENCODE dbSUPER 0.7 +4.4 4398 1.6 SSRP1 ZMYM3 KLF9 CEBPA ATF3 YY1 MXD4 CEBPB KLF11 HOMEZ TEX2 SNORA50C lnc-ERN1-3 ERN1
GH17J064152 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 +6.6 6562 1 ZNF600 TAL1 ARID1B ZFX SOX6 CBFA2T3 lnc-ERN1-3 SNORA50C ERN1 TEX2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA50C on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORA50C Gene

Latest Assembly
chr17:64,146,339-64,146,471
(GRCh38/hg38)
Size:
133 bases
Orientation:
Plus strand

Previous Assembly
chr17:62,223,699-62,223,831
(GRCh37/hg19 by Entrez Gene)
Size:
133 bases
Orientation:
Plus strand

Genomic View for SNORA50C Gene

Genes around SNORA50C on UCSC Golden Path with GeneCards custom track
SNORA50C in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORA50C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA50C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA50C Gene

Proteins for SNORA50C Gene

Post-translational modifications for SNORA50C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA50C Gene

Domains & Families for SNORA50C Gene

Gene Families for SNORA50C Gene

genes like me logo Genes that share domains with SNORA50C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA50C Gene

Function for SNORA50C Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA50C Gene

Localization for SNORA50C Gene

Gene Ontology (GO) - Cellular Components for SNORA50C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA50C: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA50C Gene

Pathways & Interactions for SNORA50C Gene

PathCards logo

SuperPathways for SNORA50C Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA50C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA50C: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA50C Gene

Drugs & Compounds for SNORA50C Gene

No Compound Related Data Available

Transcripts for SNORA50C Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA50C Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000726F61_9606 snoRNA 133 5

RefSeq: NR_002995,

Ensembl: ENST00000408535 (view in UCSC) ,

Rfam: RF00598,

snoDB: SNODB1257,

snOPY: Homo_sapiens300082,

URS0000E97600_9606 snoRNA 1508 1

LncBook: HSALNT0243781,

URS0001BC04AA_9606 snoRNA 133 1

Rfam: RF00598,

SNORA50C in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA50C Gene

No ASD Table

Relevant External Links for SNORA50C Gene

GeneLoc Exon Structure for
SNORA50C

No data available for mRNA/cDNA for SNORA50C Gene

Expression for SNORA50C Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA50C

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA50C Gene

Orthologs for SNORA50C Gene

Evolution for SNORA50C Gene

ENSEMBL:
Gene Tree for SNORA50C (if available)
TreeFam:
Gene Tree for SNORA50C (if available)
Alliance of Genome Resources:
Additional Orthologs for SNORA50C

No data available for Orthologs for SNORA50C Gene

Paralogs for SNORA50C Gene

No data available for Paralogs for SNORA50C Gene

Variants for SNORA50C Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORA50C Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORA50C Gene

Variant ID Type Subtype PubMed ID
nsv2117 CNV deletion 18451855
nsv483108 CNV loss 15286789

Additional Variant Information for SNORA50C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA50C
Leiden Open Variation Database (LOVD)
SNORA50C

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA50C Gene

Disorders for SNORA50C Gene

Additional Disease Information for SNORA50C

No disorders were found for SNORA50C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA50C Gene

Publications for SNORA50C Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  4. SIRT7-dependent deacetylation of the U3-55k protein controls pre-rRNA processing. (PMID: 26867678) Chen S … Voit R (Nature communications 2016) 3
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA50C Gene

Sources for SNORA50C Gene