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Aliases for SNORA50C Gene

Subcategory (RNA class) for SNORA50C Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORA50C Gene

  • Small Nucleolar RNA, H/ACA Box 50C 2 3 5
  • Small Nucleolar RNA, H/ACA Box 76C 2 3
  • Small Nucleolar RNA, H/ACA Box 76 2 3
  • SNORA76C 3
  • SNORA76 3
  • ACA62 3

External Ids for SNORA50C Gene

ORGUL Members for SNORA50C Gene

Previous HGNC Symbols for SNORA50C Gene

  • SNORA76
  • SNORA76C

Previous GeneCards Identifiers for SNORA50C Gene

  • GC17P064151
  • GC17P064153
  • GC17P064155
  • GC17P064157
  • GC17P064159
  • GC17P064161

Summaries for SNORA50C Gene

GeneCards Summary for SNORA50C Gene

SNORA50C (Small Nucleolar RNA, H/ACA Box 50C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA50C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA50C Gene

Genomics for SNORA50C Gene

GeneHancer (GH) Regulatory Elements for SNORA50C Gene

Promoters and enhancers for SNORA50C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J064144 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 650.7 +0.6 626 4.9 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC GC17P064164 GC17P064165 SNORA50C SNORD104 ENSG00000281311 CEP95 POLG2 FTSJ3 DDX42 ENSG00000265982
GH17J064149 Enhancer 1.2 ENCODE dbSUPER 0.7 +4.4 4398 1.6 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 SLC30A9 ATF7 NFKBIZ FTSJ3 POLG2 SLC16A6P1 STRADA MAP3K3 TEX2 SNORA50C
GH17J064154 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +9.4 9357 3.4 FOXA2 ARID4B DMAP1 ZNF48 YY1 SLC30A9 NFKBIZ RXRA REST PPARG TEX2 SNORA50C
GH17J064173 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +31.1 31062 8 PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 NFKBIZ RXRA TEX2 ERN1 SNORD104 DDX5 ICAM2 LIMD2 SNORA50C
GH17J064184 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +40.2 40195 3.6 FOXA2 MLX ARID4B DMAP1 ETS1 YY1 RXRA ZHX2 MXD4 REST TEX2 PRR29 SNORA50C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA50C on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA50C Gene

Genomic Locations for SNORA50C Gene
chr17:64,146,339-64,146,471
(GRCh38/hg38)
Size:
133 bases
Orientation:
Plus strand

Genomic View for SNORA50C Gene

Genes around SNORA50C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA50C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA50C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA50C Gene

Proteins for SNORA50C Gene

Post-translational modifications for SNORA50C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA50C Gene

Domains & Families for SNORA50C Gene

Gene Families for SNORA50C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA50C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA50C Gene

Function for SNORA50C Gene

Phenotypes From GWAS Catalog for SNORA50C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA50C Gene

Localization for SNORA50C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA50C Gene

Pathways & Interactions for SNORA50C Gene

SuperPathways for SNORA50C Gene

No Data Available

Interacting Proteins for SNORA50C Gene

Gene Ontology (GO) - Biological Process for SNORA50C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA50C Gene

Drugs & Compounds for SNORA50C Gene

No Compound Related Data Available

Transcripts for SNORA50C Gene

mRNA/cDNA for SNORA50C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA50C Gene

No ASD Table

Relevant External Links for SNORA50C Gene

GeneLoc Exon Structure for
SNORA50C
ECgene alternative splicing isoforms for
SNORA50C

Expression for SNORA50C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA50C Gene:

SNORA50C
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA50C Gene

Orthologs for SNORA50C Gene

Evolution for SNORA50C Gene

ENSEMBL:
Gene Tree for SNORA50C (if available)
TreeFam:
Gene Tree for SNORA50C (if available)

No data available for Orthologs for SNORA50C Gene

Paralogs for SNORA50C Gene

No data available for Paralogs for SNORA50C Gene

Variants for SNORA50C Gene

Sequence variations from dbSNP and Humsavar for SNORA50C Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000256520 -- 64,146,666(+) C/A downstream_transcript_variant
rs1002037217 -- 64,145,761(+) G/A upstream_transcript_variant
rs1003480901 -- 64,144,983(+) C/A upstream_transcript_variant
rs1004485105 -- 64,146,747(+) A/C downstream_transcript_variant
rs1004778125 -- 64,146,964(+) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA50C Gene

Variant ID Type Subtype PubMed ID
nsv483108 CNV loss 15286789
nsv2117 CNV deletion 18451855

Additional Variant Information for SNORA50C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA50C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA50C Gene

Disorders for SNORA50C Gene

No disorders were found for SNORA50C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA50C Gene

Publications for SNORA50C Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA50C Gene

Sources for SNORA50C Gene

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