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Aliases for SNORA49 Gene

Subcategory (RNA class) for SNORA49 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA49 Gene

  • Small Nucleolar RNA, H/ACA Box 49 2 3 5
  • ACA49 SnoRNA 3
  • ACA49 3

External Ids for SNORA49 Gene

ORGUL Members for SNORA49 Gene

Previous GeneCards Identifiers for SNORA49 Gene

  • GC12P131081
  • GC12P132515
  • GC12P129401

Summaries for SNORA49 Gene

GeneCards Summary for SNORA49 Gene

SNORA49 (Small Nucleolar RNA, H/ACA Box 49) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA49 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA49 Gene

Genomics for SNORA49 Gene

GeneHancer (GH) Regulatory Elements for SNORA49 Gene

Promoters and enhancers for SNORA49 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I132028 Enhancer 0.4 ENCODE 550.8 -1.0 -989 3.3 JUN FOS GC12P132032 SNORA49 EP400P1 NOC4L DDX51 GC12P131952 EP400
GH12I131882 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.5 -147.8 -147839 2.4 BCOR ZMYM3 ZBTB7B THRB ZNF121 ZFHX2 GATA3 EGR1 POLR2A NR2F6 PUS1 ENSG00000255992 EP400 RNU6-1017P MMP17 SNORA49 ULK1 ENSG00000256955
GH12I131772 Enhancer 1.1 Ensembl ENCODE dbSUPER 10 -256.4 -256443 4.5 PKNOX1 EBF1 DPF2 BATF IRF4 RELA SP1 POLR2A IKZF1 NFATC1 MMP17 SFSWAP RNU6-1017P SNORA49 ENSG00000255933 RNA5SP378 GC12M131802
GH12I132065 Enhancer 0.9 Ensembl ENCODE 11.9 +34.8 34845 1.7 PKNOX1 MAX EBF1 ZIC2 IRF4 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 SNORA49 ENSG00000257000 EP400
GH12I132069 Enhancer 0.7 ENCODE 11.5 +40.2 40163 2.9 HDGF KLF1 RB1 BACH1 EBF1 IRF4 ZFHX2 POLR2A ZSCAN29 BCLAF1 DDX51 SNORA49 EP400P1 ENSG00000257000 EP400
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA49 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA49 gene promoter:

Genomic Locations for SNORA49 Gene

Genomic Locations for SNORA49 Gene
chr12:132,031,224-132,031,360
(GRCh38/hg38)
Size:
137 bases
Orientation:
Plus strand
chr12:132,515,769-132,515,905
(GRCh37/hg19)

Genomic View for SNORA49 Gene

Genes around SNORA49 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA49 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA49 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA49 Gene

Proteins for SNORA49 Gene

Post-translational modifications for SNORA49 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA49 Gene

Domains & Families for SNORA49 Gene

Gene Families for SNORA49 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA49: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA49 Gene

Function for SNORA49 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA49 Gene

Localization for SNORA49 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA49 Gene

Pathways & Interactions for SNORA49 Gene

SuperPathways for SNORA49 Gene

No Data Available

Interacting Proteins for SNORA49 Gene

Gene Ontology (GO) - Biological Process for SNORA49 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA49 Gene

Drugs & Compounds for SNORA49 Gene

No Compound Related Data Available

Transcripts for SNORA49 Gene

mRNA/cDNA for SNORA49 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA49 Gene

No ASD Table

Relevant External Links for SNORA49 Gene

GeneLoc Exon Structure for
SNORA49
ECgene alternative splicing isoforms for
SNORA49

Expression for SNORA49 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA49 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA49 Gene:

SNORA49

SOURCE GeneReport for Unigene cluster for SNORA49 Gene:

Hs.742405
genes like me logo Genes that share expression patterns with SNORA49: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA49 Gene

Orthologs for SNORA49 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA49 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA49 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26079 34
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA49 34
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA49 34
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA49 34
  • 84 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA49 34
  • 81 (a)
OneToOne
Species where no ortholog for SNORA49 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA49 Gene

ENSEMBL:
Gene Tree for SNORA49 (if available)
TreeFam:
Gene Tree for SNORA49 (if available)

Paralogs for SNORA49 Gene

No data available for Paralogs for SNORA49 Gene

Variants for SNORA49 Gene

Sequence variations from dbSNP and Humsavar for SNORA49 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000559887 -- 132,030,578(+) G/T upstream_transcript_variant
rs1000610811 -- 132,030,811(+) A/G upstream_transcript_variant
rs1001158194 -- 132,031,619(+) C/T downstream_transcript_variant
rs1001278874 -- 132,030,922(+) T/G upstream_transcript_variant
rs1002227394 -- 132,031,725(+) T/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA49 Gene

Variant ID Type Subtype PubMed ID
nsv560928 CNV gain 21841781
esv3631283 CNV gain 21293372
esv3631282 CNV gain 21293372

Additional Variant Information for SNORA49 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA49

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA49 Gene

Disorders for SNORA49 Gene

Additional Disease Information for SNORA49

No disorders were found for SNORA49 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA49 Gene

Publications for SNORA49 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA49 Gene

Sources for SNORA49 Gene

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