Aliases for SNORA48 Gene

Subcategory (RNA class) for SNORA48 Gene

snoRNA

Number of RNA Genes sources:

3 / 14

Aliases for SNORA48 Gene

  • Small Nucleolar RNA, H/ACA Box 48 2 3 5
  • SNORA48 2 174
  • ACA48 SnoRNA 3
  • SNORA48A 3
  • RF00554 172
  • ACA48 3

External Ids for SNORA48 Gene

Previous GeneCards Identifiers for SNORA48 Gene

  • GC17P007424
  • GC17P007431
  • GC17P007433
  • GC17P007436
  • GC17P007439
  • GC17P007442
  • GC17P007444
  • GC17P007446
  • GC17P007478
  • GC17P007372
  • GC17P007575
  • GC17P007582
  • GC17P007805
  • GC17P007820
  • GC17P007868
  • GC17P007586
  • GC17P007593
  • GC17P007631
  • GC17P007665
  • GC17P007708
  • GC17P007722
  • GC17P007749
  • GC17P007783

Summaries for SNORA48 Gene

GeneCards Summary for SNORA48 Gene

SNORA48 (Small Nucleolar RNA, H/ACA Box 48) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA48 Gene

  • Small nucleolar RNA SNORA48

Additional gene information for SNORA48 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA48 Gene

Genomics for SNORA48 Gene

GeneHancer (GH) Regulatory Elements for SNORA48 Gene

Promoters and enhancers for SNORA48 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA48 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA48 gene promoter:
  • AP-1
  • deltaCREB
  • p53
  • PPAR-gamma1
  • PPAR-gamma2

Genomic Locations for SNORA48 Gene

Genomic Locations for SNORA48 Gene
chr17:7,574,713-7,574,847
(GRCh38/hg38)
Size:
135 bases
Orientation:
Plus strand
chr17:7,478,031-7,478,165
(GRCh37/hg19)
Size:
135 bases
Orientation:
Plus strand

Genomic View for SNORA48 Gene

Genes around SNORA48 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA48 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA48 Gene

Proteins for SNORA48 Gene

Post-translational modifications for SNORA48 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA48 Gene

Domains & Families for SNORA48 Gene

Gene Families for SNORA48 Gene

genes like me logo Genes that share domains with SNORA48: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA48 Gene

Function for SNORA48 Gene

Phenotypes From GWAS Catalog for SNORA48 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA48 Gene

Localization for SNORA48 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA48 Gene

Pathways & Interactions for SNORA48 Gene

PathCards logo

SuperPathways for SNORA48 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORA48 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA48 Gene

Drugs & Compounds for SNORA48 Gene

No Compound Related Data Available

Transcripts for SNORA48 Gene

mRNA/cDNA for SNORA48 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 ENA transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA48 Gene

No ASD Table

Relevant External Links for SNORA48 Gene

GeneLoc Exon Structure for
SNORA48

Expression for SNORA48 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA48 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA48

SOURCE GeneReport for Unigene cluster for SNORA48 Gene:

Hs.742408
genes like me logo Genes that share expression patterns with SNORA48: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA48 Gene

Orthologs for SNORA48 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA48 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA48 31
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA48 31
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA48 31
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA48 31
  • 67 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23716 31
  • 58 (a)
ManyToMany
Species where no ortholog for SNORA48 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA48 Gene

ENSEMBL:
Gene Tree for SNORA48 (if available)
TreeFam:
Gene Tree for SNORA48 (if available)

Paralogs for SNORA48 Gene

No data available for Paralogs for SNORA48 Gene

Variants for SNORA48 Gene

Additional dbSNP identifiers (rs#s) for SNORA48 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA48 Gene

Variant ID Type Subtype PubMed ID
esv2422288 CNV deletion 17116639
nsv457659 CNV loss 19166990
nsv574322 CNV loss 21841781
nsv960400 CNV duplication 23825009

Additional Variant Information for SNORA48 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA48

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA48 Gene

Disorders for SNORA48 Gene

Additional Disease Information for SNORA48

No disorders were found for SNORA48 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA48 Gene

Publications for SNORA48 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 54
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 54
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 3 54

Products for SNORA48 Gene

Sources for SNORA48 Gene